Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01076 ATGTCTTTTCAGTGTATCAGTTGCAAGAAACTAAGAAGTGTTGTAGTATTTCAAGGGAAGAGTGGATATTCCAACCTTTTCAACAGAAAAATGAGGTGTTGTAATTTTCTCCCTTTTAGATTTTCAAAAACGTGTTACCGGATGACGCATAAATGTACAGATAAGAAATTTGTGGAAGTAGACCAACATGATGTAAATGGCGGCTTAAAGTTGCCTAAGAAGGTATTTGCTCTTATGGATCATAACATCCCTGGCCTAATTGGAAATAGAAACAGTGAAATGGAATCTAAAATGAATCTGAAAGATGGAGTAGATGATTTTGACATCTCCTTGATATGTAAGATGTTTCCATCAATTACTTTTGGTAGTGCCCCTCAAGTGGATTTGTATGATGGGACCACAACATATTCTGAAACAAATATCATTTCGGCAACCAAAGATTTTGAACAGCATTTATATGATTTTTCAGAGGTAAGGGAGGCGCAAAATACTGTCTCTGAAGCATTGCCTTCTTTGCATGCTAACCATTCTAGTGCAACATCTTTGGCATTAAGAAAAGATGATTCTTTTCCTGTAAGCCCTCAACCAGTGTCTTCAATATCTGAAGAAAAATTGGATCAAGTTACTAGGGAGGATTCTCCAAAGAAAGTTGGGCTGCCGTCACAATCAAACCTTACACTTAATGAGTTATATCTCGACAAATCTGTTAATTGCTTACCTGGATTAACCAAGAAGCAATACGAGCAACTAGATAACTGTGGGCTTCACACGTTACGAAAATTGCTGCACCATTTTCCGCGATCATATGCCAATCTACAGAATGCACATGCTAAAATTGATGATGGGCAGTATTTGATCTTTGTTGGACAAGTCTTATCTTCAAGGGGTGTTAAAGCTAGTAGTTCATTTTCATTTCTTGAGGTGATTGTTAGTTGTCAGATTGTAGACGGGGAATCAGCTATTGAGCATGTCACTGGCAAAGTTGGGCAAAAGAAGACAATTTATTTGCATTTGAAGAGATTTTTCCGTGGCACACGTTTTACTTTTAAACCTTTTCTTAATAGTATTGCAAACAAGTATCAAGTGGGAGACATAACATGTGTGAGTGGCAAGGTTAGGACTATGTATGCTAAAGATCACTACGAGATGAGAGAATATAATATTGATGTGCTTGAAGATGGAAAAGATTTATCCCTTTGTGCTAAAGAGAGACCATATTGTATCTACCCTTCAAAAGGGGGTATAAACCCAACATTTCTTCGGGACATCATTGCAAGAGCTTTACATACCTTGCCAGTCAATGTTGATCCAATTCCTAAAGATATCACAGAGGAGTTTGGACTCTTAACTCTTCATGATGCATATTTTGGAATTCACAAACCAAAGGATATTAGTGACGCTGATCTGGCCCGCAAGCGGCttatatttgatgaatttttttaccTGCAGTTAGGACGATTATTCCAAATGCTAGAAGGTCTTGGTacacaaatagaaaaaaatggaTTGCTAGATAAGTATAAAAGACCAGAAAATAACACTGTGTGTACAGAGGAGTGGTCTTGTCTCACCAAGAAGGTTTTGGATCTCCTTCCCTATACTCTTACTCCCGGTCAACAGCAAGCTATTTCAGAAATTATTTGGGATTTAAAAAGGCCAGTTCCAATGAATCGGCTACTGCagGGTGATGTTGGATGTGGGAAAACTATTGTTGCTTTTCTTGCATGCATGGAGGTTATTGGCTCTGGCTATCAGGCCGCTTTCATGGTTCCAACTGAGTTGCTTGCAATCCAGCATTATGAACATTTGCTTGCCTTGCTTGAAAACTTGGACGAGGTCAAGCCGACTGTTGCTTTACTCACTGGTTCAACCCCACTAAAACAATCACGGATTATTCGCAAtGGTATCCAGACCGGAGAAATTTCAATGGTCATTGGAACTCACAGTTTGATAGCAGAAAGTGTGGAGTTCTCAGCCTTACGTATTGCTGTGGTGGATGAGCAGCATCGCTTTGGTGTGATTCAAAGAGGAAGATTTAACAGTAAGTTATTTTATAAATCTCCAATTTCGAGTATGGAAGATACTATTACAGACGGGTCCTCAAAGAGTGATGATTATATGGCTCCTCATGTTCTTGCCATGTCTGCCACTCCCATCCCAAGGACACTTGCGCTTGCTTTATATGGTGATATGTCACTGACAATGATAACCGACTTACCACCAGGAAGAATTCCTGTTCAAACATATACTATTGAAGGAAGTGACAAAGGATTCGAGGATGTCTACAAGATGATGATGGATGAGTTAAAAGATGGGGGGAAAGTTTATCTCGTCTACCCAATTATTGAACTTTCGGAGCAGTTACCTCAGCTTCGTGCTGCTTCTGCAGATCTCGAAGTTATCTCAGACCGGTTTCCAGGATACAATTGTGGTTTATTACATGGGAGAATgaaaagtgatgaaaaagaagaaacattAGGAAAGTTCAGGACTGGAGAATTGCATATACTACTTGCCACTCAAGTAATTGAAATTGGTGTTGATGTTCCAGATGCATCGATGATGGTTGTAATGAATTCTGAAAGGTTTGGAATGGCCCAATTACACCAACTCAGGGGCCGAGTTGGACGCGGAACAAGGCAGTCAAAATGTATATTAATAGCATCAACTGTGACTGGCCTTAATCGTCTGAAAATATTGGAGCAATCATCAGATGGATTTCATCTCGCTAATATGGACCTATTATTACGTGGACCTGGTGACTTGCTTGGCAAGAAACAATCTGGACATCTTCCCGAGTTTCCCATTACCAGATTGGAAGTGGATGGGGATATTTTACAAGACGCACACGTTGCTGCACTGAAAATTTTAAGTGCTTCCCATGATCTGGAGCAATTTCCTGCACTTAAACTGGAGCTTGGCATGAGACAGCCGCTTTGCCTGCTAGGTGATTGA 2955 0.3919 MSFQCISCKKLRSVVVFQGKSGYSNLFNRKMRCCNFLPFRFSKTCYRMTHKCTDKKFVEVDQHDVNGGLKLPKKVFALMDHNIPGLIGNRNSEMESKMNLKDGVDDFDISLICKMFPSITFGSAPQVDLYDGTTTYSETNIISATKDFEQHLYDFSEVREAQNTVSEALPSLHANHSSATSLALRKDDSFPVSPQPVSSISEEKLDQVTREDSPKKVGLPSQSNLTLNELYLDKSVNCLPGLTKKQYEQLDNCGLHTLRKLLHHFPRSYANLQNAHAKIDDGQYLIFVGQVLSSRGVKASSSFSFLEVIVSCQIVDGESAIEHVTGKVGQKKTIYLHLKRFFRGTRFTFKPFLNSIANKYQVGDITCVSGKVRTMYAKDHYEMREYNIDVLEDGKDLSLCAKERPYCIYPSKGGINPTFLRDIIARALHTLPVNVDPIPKDITEEFGLLTLHDAYFGIHKPKDISDADLARKRLIFDEFFYLQLGRLFQMLEGLGTQIEKNGLLDKYKRPENNTVCTEEWSCLTKKVLDLLPYTLTPGQQQAISEIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEHLLALLENLDEVKPTVALLTGSTPLKQSRIIRNGIQTGEISMVIGTHSLIAESVEFSALRIAVVDEQHRFGVIQRGRFNSKLFYKSPISSMEDTITDGSSKSDDYMAPHVLAMSATPIPRTLALALYGDMSLTMITDLPPGRIPVQTYTIEGSDKGFEDVYKMMMDELKDGGKVYLVYPIIELSEQLPQLRAASADLEVISDRFPGYNCGLLHGRMKSDEKEETLGKFRTGELHILLATQVIEIGVDVPDASMMVVMNSERFGMAQLHQLRGRVGRGTRQSKCILIASTVTGLNRLKILEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEVDGDILQDAHVAALKILSASHDLEQFPALKLELGMRQPLCLLGD 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01076 984 Pfam Helicase conserved C-terminal domain 763 878 IPR001650 -
Tsu01g01076 984 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 6 984 - -
Tsu01g01076 984 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 6 984 - -
Tsu01g01076 984 SUPERFAMILY Nucleic acid-binding proteins 231 432 IPR012340 -
Tsu01g01076 984 SMART helicmild6 782 879 IPR001650 -
Tsu01g01076 984 Gene3D - 746 917 IPR027417 -
Tsu01g01076 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 740 IPR027417 -
Tsu01g01076 984 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 549 736 IPR014001 -
Tsu01g01076 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 933 IPR027417 -
Tsu01g01076 984 SMART ultradead3 531 747 IPR014001 -
Tsu01g01076 984 Pfam DEAD/DEAH box helicase 536 721 IPR011545 GO:0003676|GO:0005524
Tsu01g01076 984 Gene3D - 491 737 IPR027417 -
Tsu01g01076 984 CDD DEXHc_RecG 474 740 - -
Tsu01g01076 984 TIGRFAM recG: ATP-dependent DNA helicase RecG 253 952 IPR004609 GO:0003678|GO:0006281|GO:0006310
Tsu01g01076 984 MobiDBLite consensus disorder prediction 185 219 - -
Tsu01g01076 984 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 760 915 IPR001650 -
Tsu01g01076 984 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 904 962 IPR045562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01076 Tsu-Chr1 9945954 9958930 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01076 01 9945954 9958930 Tsu01g01076 01 9945954 9958930 ECH