Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00464 ATGCAAGATTGTGACAGACCGACCGGACACAATCCAAATCCATGTTACTACATTGTAATAATTTTCCTAAAGAAGTTTTCTGATAGATTAATGTATATACAGCTAAGCAATTACAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGATCAATTGTTCAAAAGGACTGGAAGCCTAGAAAAAAGCTTTGAAGGGACACCAAAAATTGCAAAACCAGAaagaaatagtgaaaataatGAGAAACCTGCAGCAATTAAAGCCTCAAGTATGTTTGGTGGAACAAGGGACAAATGTTTAGGTTGTCAGAAAACAGTGTATCCAACTGAAAAGGTTACGGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGATGTACTATTAGTCCTTCTAATTACATAGCACATGAAGGAAAACTCTACTGCAAACACCACCATATCCAACTGATCAAAGAAAAGGGAAATTTAAGCCAGCTTGAAGGCAATGGAAAAACCAATGGTGATGAAGTTGCAGCTGAAACATGA 543 0.3683 MQDCDRPTGHNPNPCYYIVIIFLKKFSDRLMYIQLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPERNSENNEKPAAIKASSMFGGTRDKCLGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGNGKTNGDEVAAET 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00464 180 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 33 173 - -
Tsu01g00464 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 165 - -
Tsu01g00464 180 PANTHER OS06G0237300 PROTEIN 33 173 IPR045268 GO:0051015
Tsu01g00464 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 92 125 - -
Tsu01g00464 180 SMART lim_4 99 151 IPR001781 -
Tsu01g00464 180 Gene3D Cysteine Rich Protein 95 164 - -
Tsu01g00464 180 ProSiteProfiles LIM domain profile. 98 158 IPR001781 -
Tsu01g00464 180 CDD LIM2_SF3 100 160 - -
Tsu01g00464 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 32 65 - -
Tsu01g00464 180 Pfam LIM domain 100 154 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00464 Tsu-Chr1 3969409 3971635 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g00464 LIM 3.8e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00464 01 3969409 3971635 Tsu01g00464 01 3969409 3971635 ECH
Tsu01g00464 01 3969409 3971635 Tsu07g00879 07 7204641 7206907 PCT