Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00459 ATGTTGTGTGCTTGTTCTGGAGAGCAGTACAAATTTGAAGAGGCTGCTCCACAGTCACCAGATTCCCTAGCAACGAGGGATTTCTCTGCCAGTGGACTCTCTTCAAGAACTGGAGATTGGGATTCCAAATTGAATGACAATCAAGTTGAAGATGTTGAAACTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGAGCTTTGTTGGGGAGGCTTGAATATCATAAAGGGAACTTTGATGCCGCCCTTCAAGTGATTCAGGGTATTGATATCGATTCTTTGACCCCAAGGATGATCAGGGCTATATCTGAAAGAAACAAGCTTAGAAAATCTCGTTCAAAGGCGGTTACTGTGCTTCCTAATTTGATGTCAATGCATTCAGTAAGCCTGCTAATTGAGGCAATTTTGCTTAAAGCCAAATCCTTAGAGGAACTTGAGCGACACGAAGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAATTGAATCAGCTCTTCCTAATGGAATGCCTGATGGTATAGGTGAAGATTGTAAGTTACAGGAATGGTTTCACAGAGCATTGGAGTTGCTTCCAAATCTATGGATCCAGGCAGGTGTTCTCGATGAAGCTGTCACTGCTTACCGGCGTGCTCTGGTCAAGCCATGGAATTTGGAGCCGAAGAGGTTGGCATGTCTACAAAAGGATTTAGCTACCACACTACTCTATGGTGGTGTTGAAGTTGACCTACCTTCTGACTTGCAAGTGAATGGTCCAACAACACCAATGAGTAACATTGAAGAAGCGATACTTTTGCTATTGATACTATCAAGAAAGATGGCACTTCAAGAAATAGGTTGGGATTCTGAAATAATCGACCATCTTACATTTTCACTTTCAGTTACTGGGACATTTGAATCTTTGGCAGACTGTATAGAGCAGATCCTACCGGGTATCTTTAGTCGAGCCGAGAGGTGGTACTTTCTCGCTCTTTGTTACAGCGCCGCAGGACAGAATGAAGCAGCGTTAAACCTTTTGAGAAAAGCTTGTGGTAGTTCTGAATCAGAGCATACACCTCATTTTGCTTCATATTTGTTAGGTGCAAAACTGTGTTCCCAAAATCCAAGTCATGCTCATGAAGGCATCAAATTTTCAAAGCAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTTTGGTTCAAGGCCAACAAATTCTCGGTGTTTGTTATGGGGCTGCAGCTAGAACATCTGTAGTGGATTCTGAAagaattatatttcaaaaagaGTCTTTGAACTTTCTAAACGAAGCTTCTCTAACCGGAAGCGATGATGCAGAAGTGATGTTCAGCCTTGGACTGGAAAACGCAGTTCAGCGGAATCTTGATGCAGCTTATCAAAACATAATGAGTTACTCAGATATGATAGCTGGAAGTTCTACAAGAGGTTGGAAGCTGTTAGCGCTCATTGTATCCGCACAACAAAGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGACGCTGGTAGCGTAGATCAGTTAGAACTACTAAGACTCAGAGCTGTACTTCAAATTGCTCAGCAGCAACCAAAGCAAGCTATAGAGACCTACAGAACCTTGTTAACAGTAATAGCAGCCAAAAAGGAGCTTTTGCTTCAAGCTAAGAACTCTGAGTTTGATCAAGCAAAAATATTCAAGGATGAGGCATTAACGGAGCGAAAGTTGGAAATGGAAGCATGGCAAGATTTGGCAACAATTTATACAGATCTTAATTCCTTTCTCAATGCAAAAGCTTGTGTTGACAAAGCCCAATTACTTGAGTTTTTCTCTCCAAGAAGTTGGCATATTACAGGGAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCGTACTCGATCTCATTGTCAATAGAACCTGATTATATTCCCAGTATCAATTCAACTGCAAAATTGTTGATTAAACTTGGTATGCAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACCATGATGCATGGTTCAATCTTGGAATGGTTTCGAAAATGGAAGGTTCGTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTGGCGTTTTCAAATCCAGTGCAAAACTTTGAGTGA 2157 0.4052 MLCACSGEQYKFEEAAPQSPDSLATRDFSASGLSSRTGDWDSKLNDNQVEDVETTLKEALSLNYEEARALLGRLEYHKGNFDAALQVIQGIDIDSLTPRMIRAISERNKLRKSRSKAVTVLPNLMSMHSVSLLIEAILLKAKSLEELERHEEAAKECRIIVDTIESALPNGMPDGIGEDCKLQEWFHRALELLPNLWIQAGVLDEAVTAYRRALVKPWNLEPKRLACLQKDLATTLLYGGVEVDLPSDLQVNGPTTPMSNIEEAILLLLILSRKMALQEIGWDSEIIDHLTFSLSVTGTFESLADCIEQILPGIFSRAERWYFLALCYSAAGQNEAALNLLRKACGSSESEHTPHFASYLLGAKLCSQNPSHAHEGIKFSKQVIDLAKHQNEHFLVQGQQILGVCYGAAARTSVVDSERIIFQKESLNFLNEASLTGSDDAEVMFSLGLENAVQRNLDAAYQNIMSYSDMIAGSSTRGWKLLALIVSAQQRFKDAETIVDFALDDAGSVDQLELLRLRAVLQIAQQQPKQAIETYRTLLTVIAAKKELLLQAKNSEFDQAKIFKDEALTERKLEMEAWQDLATIYTDLNSFLNAKACVDKAQLLEFFSPRSWHITGKLFEAQSLNKEAFISYSISLSIEPDYIPSINSTAKLLIKLGMQSLPLARSFLMNALRLEPTNHDAWFNLGMVSKMEGSLQQAADCFQAAYELAFSNPVQNFE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00459 718 Gene3D Tetratricopeptide repeat domain 260 543 IPR011990 GO:0005515
Tsu01g00459 718 Gene3D Tetratricopeptide repeat domain 11 240 IPR011990 GO:0005515
Tsu01g00459 718 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Tsu01g00459 718 MobiDBLite consensus disorder prediction 22 39 - -
Tsu01g00459 718 Gene3D Tetratricopeptide repeat domain 544 717 IPR011990 GO:0005515
Tsu01g00459 718 MobiDBLite consensus disorder prediction 16 39 - -
Tsu01g00459 718 SUPERFAMILY TPR-like 479 712 IPR011990 GO:0005515
Tsu01g00459 718 PANTHER PROTEIN NPGR1 1 717 - -
Tsu01g00459 718 ProSiteProfiles TPR repeat profile. 679 712 IPR019734 GO:0005515
Tsu01g00459 718 SUPERFAMILY TPR-like 71 463 IPR011990 GO:0005515
Tsu01g00459 718 SMART tpr_5 679 712 IPR019734 GO:0005515
Tsu01g00459 718 SMART tpr_5 318 351 IPR019734 GO:0005515
Tsu01g00459 718 SMART tpr_5 512 545 IPR019734 GO:0005515
Tsu01g00459 718 SMART tpr_5 575 608 IPR019734 GO:0005515
Tsu01g00459 718 SMART tpr_5 609 642 IPR019734 GO:0005515
Tsu01g00459 718 SUPERFAMILY TPR-like 49 389 IPR011990 GO:0005515
Tsu01g00459 718 Pfam Tetratricopeptide repeat 318 348 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00459 Tsu-Chr1 3929330 3934145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00459 1 717 Calmodulin-binding Proteins AT1G27460 56.865 0.0 823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00459 01 3929330 3934145 Tsu01g00459 01 3929330 3934145 ECH