Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00457 ATGGGAACGGAAAGTTACACTTATATGGGACGGAGTTTCAATGAATTCACCATCAACGATGATTCTACTTCTTCAGCTTTCAGCGACTGTAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTACATCCCGACGACTCCTTATCGCCTGTGCTTCCGAAAATTCCGATGATCTCATCCGTCAACTTGTTTCCGATCTTCACTCCGATTCAATCGAAGAACAAAAACAAGCCGCCATGGAAATCAGATTACTCGCAAAAAACAAACCGGAAAATCGAATCAGAATTGCTAAAGCCGGAGCAATTAAACCTTTAATTTCACTCGTTTCTTCACAAGACCTTCAACTTCAAGAATATGGCGTAACCGCGATTTTGAATCTCTCTTTATGCGACGAGAATAAAGAGTTAATAGCTTCTTCAGGAGCGATTAAGCCTTTAGTTAGAGCGTTAAACTCAGGAACTTCAACTGCGAAAGAGAACGCAGCGTGTGCGTTGCTTCGTTTATCTCAGGTGGAAGAGAACAAATCAGCAATTGGAAGATCCGGTGCCATTCCGTTATTAGTGAACCTTCTAGGAAGCGGAGGAATCCGTGGGAAGAAAGACGCGTCGACGGCGCTGTATACGCTGTGTACAGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCAGGAATTATGAAGGTTTTAGTTGAGTTAATGGCGGATTTTGAATCGAATATGGTGGATAAATCAGCGTATGTTGTTAGTGTATTGGTGTCGGTGCCGGAGGCAAAGACGGCACTGGTGGATGAAGGTGGTGTTCCGGTGTTGGTGGAGATTGTGGAAGTTGGATCGCAGAGACAGAAAGAAATCGCGGCGGTTATTCTGTTACAGCTTTGTGAAGATAACATGGCTTATCGATCCATGGTGGCTCGCGAAGGTGCGATTCCACCTTTGGTTGCTTTGACTCAATCGGGCACCAATCGCGCAAAACAAAAGGCTGAGAAACTAATTGAGCTTCTGAGGCAACCAAGATCTACACGTACCACATCAGAAATTACATGTGAACCCTAG 1053 0.4492 MGTESYTYMGRSFNEFTINDDSTSSAFSDCNSDRSGEFATTSSTSRRLLIACASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIRIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKSAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCTVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEAKTALVDEGGVPVLVEIVEVGSQRQKEIAAVILLQLCEDNMAYRSMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSTRTTSEITCEP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00457 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Tsu01g00457 350 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 343 - -
Tsu01g00457 350 PANTHER U BOX DOMAIN-CONTAINING 5 343 - -
Tsu01g00457 350 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Tsu01g00457 350 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Tsu01g00457 350 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Tsu01g00457 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Tsu01g00457 350 SMART arm_5 254 294 IPR000225 GO:0005515
Tsu01g00457 350 SMART arm_5 172 212 IPR000225 GO:0005515
Tsu01g00457 350 SMART arm_5 296 336 IPR000225 GO:0005515
Tsu01g00457 350 SMART arm_5 90 130 IPR000225 GO:0005515
Tsu01g00457 350 SMART arm_5 213 253 IPR000225 GO:0005515
Tsu01g00457 350 SMART arm_5 131 171 IPR000225 GO:0005515
Tsu01g00457 350 Gene3D - 200 349 IPR011989 -
Tsu01g00457 350 Gene3D - 32 198 IPR011989 -
Tsu01g00457 350 SUPERFAMILY ARM repeat 57 332 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00457 Tsu-Chr1 3895172 3897243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00457 47 338 U-box Gene Family AT2G23140 48.993 8.13e-86 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00457 01 3895172 3897243 Tsu01g00457 01 3895172 3897243 ECH
Tsu01g00457 01 3895172 3897243 Tsu07g00889 07 7283965 7287468 PCT