Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00452 ATGGAACCTATAGTAGGAGCTTCTTTCCCTGATGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAGGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAGATGATGGATTGCACAATGTAACACAATCCACATTTAACTCTTCCGAAAATGAGTGTATGTTTTATTCTTTTGATCATATCTCAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATAcaaatcaatattttagttATCCTAATCAAGTATTATTAGATAATAATGTTAATACTTGTATATCCATGGATTTGTGCATGGATGAGAAAAACTTTGCTTCTTTTGTCACACCCTTTAATGAGATTGTAATGGAAGAGAATGTGAAATTGAATGAAGATGCTATTGGAAGTGATCATATTTTGGAGAAAAATGATTACACTACTCAAATAATGGAACATGTTGATTTTCCAAACAATAATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGatagaagttgaagaaaaaataaacaagaaatcCGAGAATCCAAAGAAAAAATCCCGCGTTTCAAAAGATGGGCAAGGATGCATGAAAAATGCAAGGTCAAAGAAGAACTTGCAGAAAGTTGCTAGCAATGAAGAGATTGCAGAAGAGATTGATAATGGAGGATCAAATGGAAATAGTTCTAGTAGTAACATTTCTGAGGATGATAATGGTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGAAAGACAAGAGCCAGTAGGGGCTCAGCAACAGATCCCCAAAGTCTGTATGCAAGGaaaagaagagagagaataaatgAACGACTAAGAATCCTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTGCAAGTTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTCAACAATTCTCTACCACTATGA 1086 0.3297 MEPIVGASFPDGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGEDDGLHNVTQSTFNSSENECMFYSFDHISNSNYISQSQENSYNSNSSASDDTNQYFSYPNQVLLDNNVNTCISMDLCMDEKNFASFVTPFNEIVMEENVKLNEDAIGSDHILEKNDYTTQIMEHVDFPNNNELQMQLKRKLDVIEVEEKINKKSENPKKKSRVSKDGQGCMKNARSKKNLQKVASNEEIAEEIDNGGSNGNSSSSNISEDDNGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNNSLPL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00452 361 MobiDBLite consensus disorder prediction 193 208 - -
Tsu01g00452 361 CDD bHLH_AtIND_like 278 340 - -
Tsu01g00452 361 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 358 - -
Tsu01g00452 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 342 IPR036638 GO:0046983
Tsu01g00452 361 MobiDBLite consensus disorder prediction 193 289 - -
Tsu01g00452 361 MobiDBLite consensus disorder prediction 237 281 - -
Tsu01g00452 361 SMART finulus 283 332 IPR011598 GO:0046983
Tsu01g00452 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Tsu01g00452 361 Gene3D - 279 335 IPR036638 GO:0046983
Tsu01g00452 361 Pfam Helix-loop-helix DNA-binding domain 287 327 IPR011598 GO:0046983
Tsu01g00452 361 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00452 Tsu-Chr1 3857406 3859032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00452 252 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 82.353 4.81e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g00452 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00452 01 3857406 3859032 Tsu01g00452 01 3857406 3859032 ECH