Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00451 atgGCTCTTGAAGCACTTAACTCACCCACTTCTACTACCCCTAAATTCACTTTTGATGATTCACCTTCTCTTCCATGGACTAAACGTAAACGTTCTAAGCGTTCACGTTCATGCACTGAAGAAGAATATCTTGCTCTCTGTCTCATCATGCTCGCTCGTGGCAAAACCAACGCCCACGATTTCAAGCCACTACCTGTAACCGCTTCATCTGGTGACAACAAACACAGTTACAAATGTTCTGTTTGTAACAAAGAGTTTTCTTCTTATCAAGCACTTGGTGGGCACAAAGCAAGTCACCGGAAAAACTCCACCGCCGGCGGTGATGAACAATCAACTTCATCAGCCGCCACCACCACAAGTTCTGCAAACACCGCCGTAAACGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAAGTCGTTCCCGACAGGACAAGCTTTGGGTGGACATAAACGTCGTCACTATGAAGGTGTTGTCGGCGGTGGTGCTGCAAGTGTATCTGAAGTGGGGTCCACACATACTCGTGATTTCGATCTGAATATCCCGGCTTTTCCGGAGATTTGTAACAAGGTcggtgaagatgaagttgaaagTCCTCATCCGATGAAGAAGAAGGCTCGTGTTTTCGTGGTACCAAAGATTGAGATTCCTATTCTCCATTGA 666 0.4444 MALEALNSPTSTTPKFTFDDSPSLPWTKRKRSKRSRSCTEEEYLALCLIMLARGKTNAHDFKPLPVTASSGDNKHSYKCSVCNKEFSSYQALGGHKASHRKNSTAGGDEQSTSSAATTTSSANTAVNGGVRSHECSICHKSFPTGQALGGHKRRHYEGVVGGGAASVSEVGSTHTRDFDLNIPAFPEICNKVGEDEVESPHPMKKKARVFVVPKIEIPILH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00451 221 Gene3D Classic Zinc Finger 74 155 - -
Tsu01g00451 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 155 IPR013087 -
Tsu01g00451 221 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g00451 221 SUPERFAMILY beta-beta-alpha zinc fingers 76 155 IPR036236 -
Tsu01g00451 221 MobiDBLite consensus disorder prediction 104 125 - -
Tsu01g00451 221 PANTHER ZINC FINGER PROTEIN ZAT10 1 209 - -
Tsu01g00451 221 MobiDBLite consensus disorder prediction 93 125 - -
Tsu01g00451 221 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 209 IPR044653 GO:0003700
Tsu01g00451 221 Pfam C2H2-type zinc finger 77 101 - -
Tsu01g00451 221 Pfam C2H2-type zinc finger 133 156 - -
Tsu01g00451 221 SMART c2h2final6 133 155 IPR013087 -
Tsu01g00451 221 SMART c2h2final6 77 99 IPR013087 -
Tsu01g00451 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Tsu01g00451 221 MobiDBLite consensus disorder prediction 1 32 - -
Tsu01g00451 221 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Tsu01g00451 221 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00451 Tsu-Chr1 3837368 3838700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00451 1 219 C2H2 Transcription Factor Family AT1G27730 50.617 1.34e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g00451 zf-C2H2_6 2.8e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00451 01 3837368 3838700 Tsu01g04701 01 54326646 54327928 ECH
Tsu01g00451 01 3837368 3838700 Tsu01g00451 01 3837368 3838700 ECH
Tsu01g00451 01 3837368 3838700 Tsu07g00895 07 7314783 7316381 PCT