Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00438 ATGGCTGATCAAGAAAACACTATCCCCACGCGCCGCCCTCAACGTGAAGCAAAGATACGCGCCGTAGCTGCACTTTGTGAACAGCGTAAAAGGAAGCGCGTTGAGCGCGTGGAGAACGTGGAGCGTGTTGCTCTTGGTGATTTAACTAACAAATCGGAGAAACATGTTTCTGATATTCATAAACAGAAAAAGAGAAACATTACGAAATCGAAGTCCGTTGAAGAATCTCCGGTACCGGAAAATTTGGAAGTGAAATCGGAAGTTAAACCTGAAGATCCTCAGTTATGTGGGCCTTATGTTTCTGATATTTACGATTATCTTCGTAATTTAgaggTTGATCCTAGTAAAAGACCTTTGGCTGATTATATACAGAAAGTTCAGAGGGATATTAATTCTAGTATGAGGGGTGTTCTTGTAGATTGGTTGGTTGAAGTTGCTGAAGAATACAAACTTGTTTCGGATACcctttatttttctgtttcatACATTGATAGGTTTTTGTCTTTGAATGATTTAAGTAGACAGAAGTTGCAATTGCTTGGTGTTTCTTCAATGCTGATTGCTTCAAAATATGAGGAGATTAAGCCACCTGAGGTGGAGGACTTTTGCTACATTACCGACAATACATACTCGAAGGAAGAGGTTTTGGGCATGGAGGCTGATATTTTGAAGGCATTGAAGTTTGAATTGGGTGGTCCTACAATAAAAACATTTCTAAGAAGATTCATCACTAAAGTTGGTCAAGAGGGCATTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTAGCTGTTACCTTGCTGAGCTCAGTTTGTTGGATTATCATTGTGTGAAGTTCTTGCCTTCTATGGTCGCTGCATCAGTTGTATTTCTCGCACGTTTTATGTTAAGCCCGAAGACTCATCCTTGGAATTTAGCCATCTATCAACTCACCAGATATAAGCCAGCTGAATTGAAGGAATGTGTTCTTACCATACATGACTTGTACCTCGGTAGGAAAGGGGGCTCTTTGCAAGCTGTGAGAGATAAATACAAACAACACAAGTTCAAATGTGTGGCAACAACACCCTCTCCACCGGAGATACCTCTTTCGTTTTTTGAATTTAGAGAGGCAGATCCATAG 1119 0.3995 MADQENTIPTRRPQREAKIRAVAALCEQRKRKRVERVENVERVALGDLTNKSEKHVSDIHKQKKRNITKSKSVEESPVPENLEVKSEVKPEDPQLCGPYVSDIYDYLRNLEVDPSKRPLADYIQKVQRDINSSMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSKEEVLGMEADILKALKFELGGPTIKTFLRRFITKVGQEGIDASELQFEFLSCYLAELSLLDYHCVKFLPSMVAASVVFLARFMLSPKTHPWNLAIYQLTRYKPAELKECVLTIHDLYLGRKGGSLQAVRDKYKQHKFKCVATTPSPPEIPLSFFEFREADP 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00438 372 ProSitePatterns Cyclins signature. 135 166 IPR006671 -
Tsu01g00438 372 Gene3D - 118 231 - -
Tsu01g00438 372 SUPERFAMILY Cyclin-like 233 359 IPR036915 -
Tsu01g00438 372 MobiDBLite consensus disorder prediction 53 87 - -
Tsu01g00438 372 PANTHER CYCLINS 31 368 IPR039361 -
Tsu01g00438 372 Gene3D - 102 353 - -
Tsu01g00438 372 SUPERFAMILY Cyclin-like 91 230 IPR036915 -
Tsu01g00438 372 SMART Cyclin_C_2 233 357 IPR004367 -
Tsu01g00438 372 Pfam Cyclin, C-terminal domain 233 356 IPR004367 -
Tsu01g00438 372 CDD CYCLIN 233 325 IPR013763 -
Tsu01g00438 372 MobiDBLite consensus disorder prediction 68 87 - -
Tsu01g00438 372 Pfam Cyclin, N-terminal domain 102 230 IPR006671 -
Tsu01g00438 372 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 31 368 - -
Tsu01g00438 372 CDD CYCLIN 134 223 IPR013763 -
Tsu01g00438 372 PIRSF Cyclin_A_B_D_E 2 362 IPR039361 -
Tsu01g00438 372 SMART cyclin_7 237 326 IPR013763 -
Tsu01g00438 372 SMART cyclin_7 140 224 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00438 Tsu-Chr1 3727528 3730545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00438 1 366 Core Cell Cycle Gene Families AT5G43080 58.038 4.05e-149 423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00438 01 3727528 3730545 Tsu01g00438 01 3727528 3730545 ECH
Tsu01g00438 01 3727528 3730545 Tsu07g00913 07 7442309 7443813 PCT