Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00434 ATGGGCCAAGCAGCTTCCACGGCCACCGTCGCCGCTAACCGCCGGGAAAGCTTACAAGGTAACCGGTCTATAAACTCCACAAAAACCATCAGATCTACTGCTTTGGTTTCTCCGATGGTAGCCAGTGAAGACGACAATGTTTTAGATCCGGTTTCCGGTGACGGTGGCGGTAGCTGTGCCAGTGGAGGTGGAATCTCCGATTATATATCAGATCTACCTGATGAATGCTTAGCTATTGTGTTTCAGTCGTTGTGTCCTGCCGATCGGAACCAGTGTTCACTCGTTTGCCGGCGGTGGTTTTACGTTGAAGGACAGAGCCGTCAACGACTTTCGTTGAACGCGAAACTCGATCTGCTTCCGGTAATTCCTTCTCTCTTTGATCGATTCGATTCAGTGACGAAATTAGCGCTTAAATGTGATCGTAGATCTGTTAGTATTAGAGATGAAGCTCTAGTTATAATCTCCGAGCGTTGTCCTAATCTCACGCGCCTTAAGCTTCGCGCGTGTCGTGAACTTACCGATGCTGGAATGGAAGCTTTTGCTAAGAATTGTAAAGGTTTGAAGAAATTATCGTGTGGATCTTGTACTTTTGGATCTAAAGGTATGAACGCTGTGCTTGATAATTGTGCTGCACTTGAGGAGCTTTCAGTGAAGCGTCTCCGTGGAATTGCGGAGACTGCGGTGGCTGATCCGATTGGACCGGGTGTTGCTGCTGCTTCACTTAAGACGATTTGTTTGAAGGAGCTTTATAATGGACAGTGTTTTGGTTCGTTGATTCTCGGTGCAAAGaatctgaagactttgaagcttTTTCGATGTTCGGGTGATTGGGATACACTTTTTACACTAATGGCAGAACGAGTTAAGAGCATGATTGTTGAAGTTCACTTTGAGAGGCTTCAGATCAGTGATATTGGATTGCAAGCTATTTCCAATTGTTCAAATTTGGAGATTTTGCATCTTGTTAAGACACCTGAGTGCACTGATATGGGACTTGTTGCAATTGCGGAACGGTGTAAGTTGTTGAGGAAGCTTCATATTGATGGGTGGAAAGCAAATCGGATTGGTGATGTAGGGTTAATTGCTGTTGCCAAGTTCTGCCCTAATTTACAAGAATTGGTGCTTATTGGTGTTAACCCTACCAAAGCGAGTTTGGAAATGTTGGCAGCTAATTGCCCTAATCTGGAGAGGTTGGCTTTGTGCGCAAGTGATACTGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTTTGGCTTTGAAGAAACTTTGCATTAAGAGTTGTCCCGTTACTGATCAAGGGATGGAAGCTTTGGCAAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAATGTAAAGGTGTTACCCCTGAGGGTGGTGATTGGTTGAGGCTCTCTAGAGGATCAGTTGCTGTTAATTTGGATACTGTTGAAGCGGAACTTCAAGATGCTAGTGCTAGTGATGGTGGAGCACAAGACAATGGTATAGAATTTGCTCCAATGCCTGCAAATCTTGCACCAAGAAGTACTGTTCGTTCGAGTTCATTCAAGCAAAGGTTAGGGCGTTTGTATGGGAGGAAAATAGTGGCTAGTACTTTGAGAAGATGGTCCTCCGGTGGTAGCACTAGTGCCCGCCATGGTTAG 1650 0.4461 MGQAASTATVAANRRESLQGNRSINSTKTIRSTALVSPMVASEDDNVLDPVSGDGGGSCASGGGISDYISDLPDECLAIVFQSLCPADRNQCSLVCRRWFYVEGQSRQRLSLNAKLDLLPVIPSLFDRFDSVTKLALKCDRRSVSIRDEALVIISERCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGIAETAVADPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVKSMIVEVHFERLQISDIGLQAISNCSNLEILHLVKTPECTDMGLVAIAERCKLLRKLHIDGWKANRIGDVGLIAVAKFCPNLQELVLIGVNPTKASLEMLAANCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVTDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRLSRGSVAVNLDTVEAELQDASASDGGAQDNGIEFAPMPANLAPRSTVRSSSFKQRLGRLYGRKIVASTLRRWSSGGSTSARHG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00434 549 PANTHER UNCHARACTERIZED 52 479 - -
Tsu01g00434 549 ProSiteProfiles F-box domain profile. 66 99 IPR001810 GO:0005515
Tsu01g00434 549 SUPERFAMILY F-box domain 66 102 IPR036047 GO:0005515
Tsu01g00434 549 Pfam Leucine Rich repeat 421 440 IPR001611 GO:0005515
Tsu01g00434 549 Pfam Leucine Rich repeat 158 181 IPR001611 GO:0005515
Tsu01g00434 549 Gene3D Ribonuclease Inhibitor 106 479 IPR032675 -
Tsu01g00434 549 Gene3D - 68 105 - -
Tsu01g00434 549 SMART LRR_CC_2 313 338 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 158 183 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 367 391 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 418 442 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 184 208 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 443 470 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 339 366 IPR006553 -
Tsu01g00434 549 SMART LRR_CC_2 392 417 IPR006553 -
Tsu01g00434 549 PANTHER F-BOX PROTEIN SKIP2 52 479 - -
Tsu01g00434 549 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g00434 549 SUPERFAMILY RNI-like 119 468 - -
Tsu01g00434 549 Pfam F-box domain 69 99 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00434 Tsu-Chr1 3662531 3664900 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00434 01 3662531 3664900 Tsu01g00434 01 3662531 3664900 ECH