Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00424 ATGAAAGAAGATAGGGAATATTGTTGTTCGATGAATTCAAGAACAAATAATATCTCTAAGGAGatgagaaaagagaaaaaagctATGAAACCATATAGAGGAATTAGGATGAGAAAGTGGGGTAAATGGGTTGCAGAAATTAGAGAACCAAATAAAAGATCAAGAATTTGGTTAGGTTCTTATATAACACCTATTGCTGCTGCACGTGCCTATGACACCGCTGTGTTTTATCTTAGAGGTCCTTCTGCTCACCTTAATTTTCCAGAATTATTGTTCAAAGatcaagaacaagaacaagatgAAGACAATCAACAACAACGTGGGAATATGTCTTCTGATTCAATAAGGAAAAAAGCTACTCAAGTTGGTGCTAGAGTTGATGCTCTTGAAATTCATGCTTCTTCAAATAATCATGTTCATGATGACTCCAATTcttctactactactactaataatTCTCTCAAACCTGACTTGAATGAGTTTCCAAATCCTGAGGATTATTGA 504 0.3095 MKEDREYCCSMNSRTNNISKEMRKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSAHLNFPELLFKDQEQEQDEDNQQQRGNMSSDSIRKKATQVGARVDALEIHASSNNHVHDDSNSSTTTTNNSLKPDLNEFPNPEDY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00424 167 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Tsu01g00424 167 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Tsu01g00424 167 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Tsu01g00424 167 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Tsu01g00424 167 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Tsu01g00424 167 MobiDBLite consensus disorder prediction 138 158 - -
Tsu01g00424 167 MobiDBLite consensus disorder prediction 104 118 - -
Tsu01g00424 167 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Tsu01g00424 167 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
Tsu01g00424 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 166 - -
Tsu01g00424 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 166 - -
Tsu01g00424 167 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Tsu01g00424 167 MobiDBLite consensus disorder prediction 90 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00424 Tsu-Chr1 3564892 3565743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00424 26 166 AP2-EREBP Transcription Factor Family AT2G23340 55.782 8.47e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g00424 AP2 3.9e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00424 01 3564892 3565743 Tsu01g00424 01 3564892 3565743 ECH