Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00422 ATGAAGGTGCATCAATTCACACGTGGATTTTGGGAGCATGAACCTTCCCTTACACTTGGTTGCAAACGTTTACGCCCTCTTGCTCCTAAATTTTCTAATAGCACCGATAATTCTACTAATCATACCCCTTCTCTTTCTTTTGATCTCAAGAGTTTCATTAAACCTGAAAGTGCTTCCACAATTAATCTTTCTTCCTCTGATCATGATAGCAAGAAAGATCCACCTTCACCACAAAGCCAGGTTGAAACACATATTCCAGGAGGGACAAGGTGGAATCCAACACAAGAACAAATAGGAATCTTAGAGATGTTATACAGAGGTGGAATGAGAACACCAAATGCACAACAAATAGAACAGATAACTGTTCAACTTAGCAAGTACGGTAAAATTGAAGGTAAAAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGTCTTGTTCATAGTCCTCGTACTCCCACCACCACACTAGTGTCATCCACCTTTAGTTGCATTACCACTTTGGACATCCCCAAAAAGGAAGAAGTAATGGAAAGAGATCAAGGAGATGATAGTCCATTAAAGAAGAGTAGGAGTTGGCCATTTGAGTATTTGGAAGAGAAAAATTGGTCAATTTGCAAACAAGAGGAACATAAAACTCTAGAGCTTTTCCCATTACACCCGGAAGGCAGATGA 708 0.3997 MKVHQFTRGFWEHEPSLTLGCKRLRPLAPKFSNSTDNSTNHTPSLSFDLKSFIKPESASTINLSSSDHDSKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLVHSPRTPTTTLVSSTFSCITTLDIPKKEEVMERDQGDDSPLKKSRSWPFEYLEEKNWSICKQEEHKTLELFPLHPEGR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00422 235 Gene3D - 88 155 - -
Tsu01g00422 235 MobiDBLite consensus disorder prediction 59 93 - -
Tsu01g00422 235 MobiDBLite consensus disorder prediction 76 93 - -
Tsu01g00422 235 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 235 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Tsu01g00422 235 CDD homeodomain 89 150 IPR001356 GO:0003677
Tsu01g00422 235 ProSiteProfiles 'Homeobox' domain profile. 94 149 IPR001356 GO:0003677
Tsu01g00422 235 SMART HOX_1 86 153 IPR001356 GO:0003677
Tsu01g00422 235 Pfam Homeodomain 89 148 IPR001356 GO:0003677
Tsu01g00422 235 SUPERFAMILY Homeodomain-like 88 155 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00422 Tsu-Chr1 3539659 3541473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00422 1 169 Wox Gene Family AT1G46480 60.674 4.51e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu01g00422 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00422 01 3539659 3541473 Tsu01g00422 01 3539659 3541473 ECH