Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00421 ATGTATTCTCATCGTGATCCTAGTATTCGGAAGAGTGGCACTGCTAATATTTTTATCAAGAATTTGGATAAGACAATTGACCACAAAGCTTTACATGACACCTTTTCTACTTTCGGACATATTCTGTCTTGCAAGATAGCGACTGATGGTTCTGGTCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGACTGCGGAATCTGCTCAGGGTGCAATTGATAAGTTAAATGGCATGCTGATCAATGACAAGCAGGTGTATGTAGGTCATTTCCTACGTAAGCAGGACAGAGATAATGATCTTAGTAAAACTAAGTTTAATAATGTCTATGTGAAAAATCTATCAGAGTCATTTTCGGAAGATGACTTGAAAAATACTTTTGGAGAGTACGGTGCTATTACTAGTGCTGTTTTGATGAGGGATGCAGATGGTAGGTCGAAgtgttttggttttgtcaaTTTTGAAAGTCCTGATGATGCTGCTAAAGCTGTTGAGGCATTGAATGGAAAGAAAGTTGATGACAAGGAGTGGTATGTGGGAAAAGCCCAGAAAAAATCTGAACGGGAGCAAGAGCTGAAAGGTCGGTTTGAGCAGACTGTAAAGGAAACTGTAGACAAATATCAAGGTGTGAACCTGTATCTCAAGAACTTGGACGATTCCATTAGTGATGAAAAACTCAAAGAAATCTTCTCTGAGTTTGGCACAATTACCTCGTACAAGATTATGCGAGACCCAAATGGAGTCAGCAGAGGATCTGGATTTGTTGCATTTTCAACTCCAGAGGAAGCAACAAGAGCTCTTGGGGAGATGAATGGAAAAATGATTGTCAGCAAACCTCTTTATGTTGCTATTGCACAGAGAAAGGAAGATAGAAAGGCAAGGTTGCAGGCACAATTTTCACAAATGAGGCCTGTTGCAATTTCACCTTCTGTTGCTCCTCGAATGCCACTCTACCCTCCCGGTGCTCCTGGTATTGGACAACAATTCATGTATGGTCAAGGACCACCAGCCATGATGCCTCCACAAGCTGGATTTGGATATCAGCAGCAACTTGTTCCTGGGATGAGACCTGGCGGTGGTCCTATGCCAAGCTACTTTGTTCCAATGGTTCAGCAGGGGCAACAAGGTCAGCGTCCTGGTGGACGCCGAGGTCCTGTTCAACAACCCCAGCAGCAAGTGCCAATGATGCAGCAGCAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTCCTGGCCGCAACAACATTCAAGATGCCCCAGTGGCTGGAGGAATGATGTCCTATGACATGGGAGGTCTTCCACTCCGTGATGTTGTGTCGCCTATGCCCATTCATGCTTTGGCTACAGCACTTGCGAATGCTCCCCCAGAACAGCAAAGGACTATGCTTGGAGAGGCTTTGTATCCACTAGTAGATCAGCTGGAACATGATTCTGCAGCTAAGGTTACTGGTATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTTATTGAGTCACCAGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGACGTGCTGAGAAATGTTGCTCAACAGCAAGGGAACAGCCCAGCAGATCAACTTGCTTCACTTTCTCTCAACGATAATCTATAA 1617 0.4416 MYSHRDPSIRKSGTANIFIKNLDKTIDHKALHDTFSTFGHILSCKIATDGSGQSKGYGFVQFETAESAQGAIDKLNGMLINDKQVYVGHFLRKQDRDNDLSKTKFNNVYVKNLSESFSEDDLKNTFGEYGAITSAVLMRDADGRSKCFGFVNFESPDDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKETVDKYQGVNLYLKNLDDSISDEKLKEIFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEATRALGEMNGKMIVSKPLYVAIAQRKEDRKARLQAQFSQMRPVAISPSVAPRMPLYPPGAPGIGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGPVQQPQQQVPMMQQQMLPRQRVYRYPPGRNNIQDAPVAGGMMSYDMGGLPLRDVVSPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQGNSPADQLASLSLNDNL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00421 538 CDD RRM3_I_PABPs 105 184 - -
Tsu01g00421 538 MobiDBLite consensus disorder prediction 519 538 - -
Tsu01g00421 538 SUPERFAMILY RNA-binding domain, RBD 106 290 IPR035979 GO:0003676
Tsu01g00421 538 SMART poly_2 454 517 IPR002004 GO:0003723
Tsu01g00421 538 Gene3D - 196 295 IPR012677 -
Tsu01g00421 538 Gene3D - 4 96 IPR012677 -
Tsu01g00421 538 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Tsu01g00421 538 SUPERFAMILY RNA-binding domain, RBD 3 96 IPR035979 GO:0003676
Tsu01g00421 538 Gene3D - 97 195 IPR012677 -
Tsu01g00421 538 PANTHER RNA BINDING PROTEIN 1 524 - -
Tsu01g00421 538 SMART rrm2_1 107 179 IPR003954 GO:0003676
Tsu01g00421 538 SMART rrm2_1 210 282 IPR003954 GO:0003676
Tsu01g00421 538 SMART rrm2_1 16 88 IPR003954 GO:0003676
Tsu01g00421 538 Pfam Poly-adenylate binding protein, unique domain 450 514 IPR002004 GO:0003723
Tsu01g00421 538 CDD RRM2_I_PABPs 13 89 IPR045305 -
Tsu01g00421 538 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Tsu01g00421 538 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Tsu01g00421 538 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Tsu01g00421 538 SUPERFAMILY PABC (PABP) domain 390 532 IPR036053 GO:0003723
Tsu01g00421 538 PANTHER POLYADENYLATE-BINDING PROTEIN 1 524 - -
Tsu01g00421 538 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 92 IPR000504 GO:0003723
Tsu01g00421 538 Gene3D - 438 521 - -
Tsu01g00421 538 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 442 519 IPR002004 GO:0003723
Tsu01g00421 538 SMART rrm1_1 107 179 IPR000504 GO:0003723
Tsu01g00421 538 SMART rrm1_1 210 282 IPR000504 GO:0003723
Tsu01g00421 538 SMART rrm1_1 16 88 IPR000504 GO:0003723
Tsu01g00421 538 CDD RRM4_I_PABPs 208 286 - -
Tsu01g00421 538 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Tsu01g00421 538 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 1 515 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00421 Tsu-Chr1 3532148 3536015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00421 1 535 Eukaryotic Initiation Factors Gene Family AT4G34110 70.841 0.0 743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00421 01 3532148 3536015 Tsu01g00421 01 3532148 3536015 ECH