LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00419	ATGCAAGGGCAGAGAGGCGCAATTGGTTCCTCCTCTGAAACCTTTGAGTTCGATTGTGGATCTACATCAAGTACTGCTGCAGTTGATCAGCATCAGCACATTTTTTGGAATAATATGCGCACTCCGGCCGAAAATCGGATACCTGAATTTATACTTCCTCCCGGTGATATGAATCAATCTCATGGGAATTCTGTAAATCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGCGAGCCAAGTTCCAGTAATACACAGAACGAAGCTAACAACAATGAGCTGAAACGGGAGTTAGGGTTATCACCTCCGATAAATGGCGATGCTTTTTCTGGTCCAAGACTAGAAGAAAGGCACTTCGAACCAACTAATGCATTTTCATTGGATAATGTCAATACAGGTCCTATGTATATGTGTAGCTCCAATTCTCATTTGGTGCCGCAAAATCTCAACTTAAATGCTGCTTTAGCGGATAATGTCAGTGATAATAATAGCTATCATGTGGAAGTTGATCATCCTAACGTGACCAAATCTAGTGGTCCGCTGAATGAGCATCTTCCACCTCCAATTAGTTCTGGTTCTTTTTTGCTTCCTTCTGCAAGTAATAGCATTTTTGTTGGGGATACCGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGTGTGTCTTGTAAAAGAAAGGCAGTTGAAGGAAATGTTGGACAATCTTCTAACGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGAAGTGCTTGGAATACTCTTCCTACTCAGGATTTTACAGGGAGCAGTTTTAACAGATCAGCACCGGCAGAACAGGTTACTGCAAGACTTGGCCTTGCTATCGGGGGAGGATCTTCTGAACCCATACCTGAGTCAACTGTTGCAGGAAACTCAGAAAGCTTCCACAGAAATTTTCGTTTGAGGCTAAACCCTTCAAGCCAACAAATGTCTCTCCCTCAACCCACATTCTCAAACGGGAGTGTGATCAGGAATTCCAGTGttccttcatcttctccaaTATTGCAAAGGTTCAACCCTATTGATAATCCTGTGGACTTGAGGTCAGTACAACCGGTAGATCTCATGCTTCCTCAAAGCCAGCCACTTCTTATTCATGTTCCTTCTTTACCAAGGAGCGCACAATCAGTTAGGTGGAGTGGTGGGTCTAGCTCAACAAACAACCATTCGTCAAATTCAGTTTTAGGCGTAGATAGGGATACTCAACCACATGAGGGAGCAAACTCAAGAACCATGGCTAGAAACATTTTAGATCACCCAGTTTTTGTACCTGCAAATGTACGAAATGCAGCTCGAAATCCAACAAGACCTTCGAGTAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCGTCATCACGGACTGCTCCAAATCCTCCCGCATTGAATCCATCATCTGTCTCGGCGTGGGTATCTCGTCCTAATCCACAGCAGTATCCACGCAGGTTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTCTGAAGGTGGAAGTTCAAGCACCAACTATTCTTCCTTGCGCGCTCCTTCTGCTTCGTCAGAATCAAGAGGACCGCCATCCGGGACGAACCCTGGATCATCTCCATGGTTGGAGAGGTCAGCTGAGAGTGAATTTGGAGTTCCCTATACCTTACGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGTAACGTGTTGGGCATGATGCGTAGGGGTGGGAACTTGCGGTTTGAGGATGTTATGATTCTCGATCATTCAATGTTTTCTGGGATTGCTGATATGCAAGATCGACACAGGGATATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGCATCGGAAATGTCAGTACAGGATTGAATGAGGAGACCATTATGAAACATTTGAAACTGAAGAAATATTCAGTTGATGAATCAGGTTCTCAGAATGAAGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAAAATGAAGATGATATCGGATCGTTGGATTGCGGGCACGATTACCATACCGACTGTATTAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATGA	2133	0.4407	MQGQRGAIGSSSETFEFDCGSTSSTAAVDQHQHIFWNNMRTPAENRIPEFILPPGDMNQSHGNSVNHEWQNLSGWSLGEPSSSNTQNEANNNELKRELGLSPPINGDAFSGPRLEERHFEPTNAFSLDNVNTGPMYMCSSNSHLVPQNLNLNAALADNVSDNNSYHVEVDHPNVTKSSGPLNEHLPPPISSGSFLLPSASNSIFVGDTDGRPGCSLDTRRVSCKRKAVEGNVGQSSNGGSSSYSQHTDGSAWNTLPTQDFTGSSFNRSAPAEQVTARLGLAIGGGSSEPIPESTVAGNSESFHRNFRLRLNPSSQQMSLPQPTFSNGSVIRNSSVPSSSPILQRFNPIDNPVDLRSVQPVDLMLPQSQPLLIHVPSLPRSAQSVRWSGGSSSTNNHSSNSVLGVDRDTQPHEGANSRTMARNILDHPVFVPANVRNAARNPTRPSSSANLSIPGNVASSSRTAPNPPALNPSSVSAWVSRPNPQQYPRRLSEYVRRSLFSPGSEGGSSSTNYSSLRAPSASSESRGPPSGTNPGSSPWLERSAESEFGVPYTLRSLAAGGEGSSRLVSELRNVLGMMRRGGNLRFEDVMILDHSMFSGIADMQDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKLKKYSVDESGSQNEAEPCCVCQEEYKNEDDIGSLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAT	710

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00419	710	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	709	IPR045191	GO:0061630
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	1	20	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	229	262	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	501	539	-	-
	Tsu01g00419	710	Pfam	Ring finger domain	663	704	IPR001841	-
	Tsu01g00419	710	SMART	ring_2	663	703	IPR001841	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	56	90	-	-
	Tsu01g00419	710	ProSiteProfiles	Zinc finger RING-type profile.	663	704	IPR001841	-
	Tsu01g00419	710	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	1	709	-	-
	Tsu01g00419	710	CDD	RING-H2_TTC3	662	704	-	-
	Tsu01g00419	710	SUPERFAMILY	RING/U-box	662	706	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	437	483	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	382	405	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	499	542	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	438	483	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	382	422	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	57	90	-	-
	Tsu01g00419	710	MobiDBLite	consensus disorder prediction	227	262	-	-
	Tsu01g00419	710	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	626	707	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00419	Tsu-Chr1	3485046	3491769	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00419	1	710	C3H Transcription Factor Family	AT2G15530	31.201	1.10e-73	250

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g00419	01	3485046	3491769	Tsu02g03309	02	37037878	37042802	ECH
	Tsu01g00419	01	3485046	3491769	Tsu01g00419	01	3485046	3491769	ECH