Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00418 atGGCTGGTTCTTCATCTGATGATATTATGCACCAAACACACCCATCAATAGTTCCTCCTGATTCACAAGATTTTTCCAATTTACTATTCAACCAACTCATGGatccttcttcatcttcctcatcttTCAATTTCTCTGATCCTTTTCCTAATCCTTCCACCACCATCCCTTACCCTCCTTCTCATTTCACTTCTTCTTCTACTCAGaATGATGAAGCTTCAGAGTTGCCATCATCAAAGGCTACCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTTCATAATTTATCTGAAAAGAGAAGGAGGAGTAAGattaatgagaaattaaaagCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAACTTCAGCTTCAAGTACAAATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCGATGTCTTTATCAGGAGGACCGCGGCCTACAATGTTTTCTCAGACCGAGTTGTTGAATCTTGATGAGGGTAATATCGGATTTCACAATTCTATCAATGCAAATGATGAATGTTTCGTGCGACCTGGTTTTAGTTTTCCAGAACAATGTAGCATCTCAAATCAATCTGTTATTTTACCGTCGACGACAAATATAGCTAATTTTGATGCCTCATCAAGTTTTCAACCCTCTATTAAGGATGTTTTCTGCAACAACATGCCACAACTGATTTTGGATTCAACAAGGATTGGAAAAACTCCTCCAGATGTGTCTTAA 789 0.3638 MAGSSSDDIMHQTHPSIVPPDSQDFSNLLFNQLMDPSSSSSSFNFSDPFPNPSTTIPYPPSHFTSSSTQNDEASELPSSKATPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGPRPTMFSQTELLNLDEGNIGFHNSINANDECFVRPGFSFPEQCSISNQSVILPSTTNIANFDASSSFQPSIKDVFCNNMPQLILDSTRIGKTPPDVS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00418 262 MobiDBLite consensus disorder prediction 1 51 - -
Tsu01g00418 262 SMART finulus 99 148 IPR011598 GO:0046983
Tsu01g00418 262 MobiDBLite consensus disorder prediction 58 89 - -
Tsu01g00418 262 CDD bHLH_AtPIF_like 93 155 - -
Tsu01g00418 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Tsu01g00418 262 Gene3D - 88 152 IPR036638 GO:0046983
Tsu01g00418 262 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 63 240 IPR031066 -
Tsu01g00418 262 MobiDBLite consensus disorder prediction 1 107 - -
Tsu01g00418 262 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983
Tsu01g00418 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 153 IPR036638 GO:0046983
Tsu01g00418 262 MobiDBLite consensus disorder prediction 91 107 - -
Tsu01g00418 262 PANTHER TRANSCRIPTION FACTOR SPATULA 63 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00418 Tsu-Chr1 3474547 3477248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00418 93 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 84.722 2.25e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g00418 HLH 1.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00418 01 3474547 3477248 Tsu01g00418 01 3474547 3477248 ECH