Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00417 ATGGCTTTCCTTCAAGATCAGTTTCAACAACGTCActatcaaaaccaacaacaacaacaacctcaaccaCAAACCAAATCTTTCAGAAATTTACGAACAATTGATGGTCAGATGTCACAGCAGATGGCTTTTTACAACCCTACTGATTTGCAAGATCAGTCTCAGCATCCACCTTACATTCCTCCATTCCATGTTGTTGGTTTTGCTCCTGGTCCTGTAATTCCTGCTGATGGAAGTGATGGTGGTGTTGATTTGCACTGGAATTTTGGTTTGGAACCGGAGAGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAATAATTCTCAGATATCTTCTGTGGATTTCCTGCAACCTCGATCTGTGTCCACGGGGTTGGGCTTGTCGCTTGATAATACTCGCTTGACTTCAACCGGAGACTCCGCTTTGCTGTCACTTATAGGGGACGACATTGATCGTGAGTTACAGCAGCAGGATTTAGAGATGGATAGATTTCTCAAACTGCAGGGTGAACAATTGCGGCAAACAATCTTGGAGAAAGTTCAGGCAACCCAACTTCAGAGTGTTTCAATCATCGAGGACAAGGTCCTCCAAAAACTTCGTGAGAAAGAAACCGAGGTTGAAAACATCAACAAGAGGAATATGGAACTCGAAGATCAAATGGAGCAATTGAGTGTAGAAGCAGGTGCATGGCAACAGCGAGCCAGATACAACGAAAACATGATTGCTGCTCTCAAGTTTAACCTCCAACAAGCTTACCTCCAAACTAGAGATAGTAAAGAAGGATGCGGTGACAGCGAGGTAGACGATACAGCTTCTTGCTGTAATGGTCGTTCACTTGATTTTCATCTGCTCTCCAACGAAAATTCCAATATGAAAGACATGATGAAATGCAAGGCTTGCAGAGTCAACGAAGTGACCATGGTTTTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGCGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTCATCGGCATGGAGGTCTATATGTAA 1032 0.4118 MAFLQDQFQQRHYQNQQQQQPQPQTKSFRNLRTIDGQMSQQMAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVIPADGSDGGVDLHWNFGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLTSTGDSALLSLIGDDIDRELQQQDLEMDRFLKLQGEQLRQTILEKVQATQLQSVSIIEDKVLQKLREKETEVENINKRNMELEDQMEQLSVEAGAWQQRARYNENMIAALKFNLQQAYLQTRDSKEGCGDSEVDDTASCCNGRSLDFHLLSNENSNMKDMMKCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00417 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 343 IPR013083 -
Tsu01g00417 343 Coils Coil 192 233 - -
Tsu01g00417 343 Pfam Zinc finger, C3HC4 type (RING finger) 295 333 - -
Tsu01g00417 343 ProSiteProfiles Zinc finger RING-type profile. 297 332 IPR001841 -
Tsu01g00417 343 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 6 343 IPR017066 -
Tsu01g00417 343 PIRSF SBP1_RNase_bind 4 343 IPR017066 -
Tsu01g00417 343 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g00417 343 PANTHER F2G19.2 6 343 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g00417 Tsu-Chr1 3469123 3471600 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00417 297 333 Miscellaneous Gene Families AT4G39050 45.946 2.87e-07 50.4
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00417 01 3469123 3471600 Tsu01g00417 01 3469123 3471600 ECH