Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00402 ATGGAAGTTTCAAATATTCATAAGTTGGTGAAGACAGCACCATCCAAAGCTGTGGTTGTCAGATTCAATTTGTTCTGCCTTGCCATCTTTCTTGTTGTTTATGCAACTCTTCTTCTACGTCCTTCTTCTTCTGTCTATTTCGATAATGCAGCCTCGCTTGTTAGATGTTCCTTGAGAGAATGTCATCATAAGGGAGAAAAAAGTATGAAAATGAAAGCGGTATTAGAGGAGttaccaaaacaaaaatcatggaATTCAAAGAAGAATGGACCAAAGATAGAAGTACCAAGTTTTTTACGCGAAAAAATTGGCAAAGGAATGAAAATTGGAATGGTAAACATGAACGAAGATGATGATGTAAGCGAATGGAACATACATGGAGAAACAATACAAGTTAATTTCGACAAAGTAACACAATTTTTCAACTGGACGGATTTATTTCCCGAATGGAttgacgaagaagaagaaagcgaCGTCCCAACATGTCCTGAAATACCAATGCCTGAATTCACAACATatgaaaaaatggatttaatAGTTGCAAAGTTACCATGCAAGTATCCATTAGAAGGGTGGGGGAGAGAAGTCTTAAGATTACAAGTTCATCTTATTGTGGCAAACATGATTGtgaaaaaggggaaaaaagaTTGGAAATTGAAGAGTAAGGTTGTGTTTTGGAGTAAGTGTAGACCAATGTTGGAAATTTTTAGATGTGATGATTTGGTTAAACATGAAGGTGATTGGTGGCTTTTTGAGGTTGATGTAAAGAGATTGgaacaaaaaatttctttgcCTGTTGGGTCATGTAATTTGGCTTTACCTCTATGGGAACAAGGGACAGACAAAGTATACGACATAACCAAAATGGAACAAAACGTAAGAAGCAAAATAAGAGCAAAACGTGAAGCATATGCAACAGTACTACACTCTTCAGAAAGCTACGTTTGTGGAGCAATAACCTTAGCACAAAGCCTTCTAAAAACCGGAACCAAACGCGACCTTATACTTCTTATCGACAATTCCATCTCTGTCCACAAACGCCGTGCATTGGCTTCCGCCGGTTGGAAGACTCGAACTATCACTCGAATTCGAAACCCGAGAGCTGAGAATGGAACATACAATGAGTATAATTATAGTAAGTTTAGGTTGTGGCAACTTACTGATTATGAGAAGATTATCTTTATAGATTCTGACATTGTTGTACTTCGGAATCTTGATATTCTCTTCAATTTTCCTCAAATGTCTGCCACTGGAAATGATCAATCCATTTTCAACTCTGGCATCATGGTTATTGAGCCCTCCAATTGTACCTTCagTGTACTCATGAGCCGGCGTCACGACATAGTTTCATACAATGGAGGTGATCAAGGATTTCTAAATGAGATATTTGTATGGTGGCATAGACTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGGCAAACACAACAATAGAAGCAAGTGTGAAAAATGGTTTATTTGGTGCTGACCCTCCAAAACTATATGCAATTCATTATCTTGGTTTAAAACCTTGGCATTGTTATAGAGACTATGATTGCAATTGGGATGTTGTGGATCAAAGAGTTTATGCTAGTGATGTAGCACACCAACGTTGGTGGAATTTTCATGATGGAATGGACAAGAAGTTACAAGGTTTTTGTAGGTTGACAAGACAACGTAGGACTGAGTTGAATTGGGAAAGAAGAAGATCTAATAAGATGGGATCACTTGATTATCATTGGAAGATTAATGTTACTGATCCTAGAAAATCAGGATCTCTTTTGATGGATTAG 1794 0.3551 MEVSNIHKLVKTAPSKAVVVRFNLFCLAIFLVVYATLLLRPSSSVYFDNAASLVRCSLRECHHKGEKSMKMKAVLEELPKQKSWNSKKNGPKIEVPSFLREKIGKGMKIGMVNMNEDDDVSEWNIHGETIQVNFDKVTQFFNWTDLFPEWIDEEEESDVPTCPEIPMPEFTTYEKMDLIVAKLPCKYPLEGWGREVLRLQVHLIVANMIVKKGKKDWKLKSKVVFWSKCRPMLEIFRCDDLVKHEGDWWLFEVDVKRLEQKISLPVGSCNLALPLWEQGTDKVYDITKMEQNVRSKIRAKREAYATVLHSSESYVCGAITLAQSLLKTGTKRDLILLIDNSISVHKRRALASAGWKTRTITRIRNPRAENGTYNEYNYSKFRLWQLTDYEKIIFIDSDIVVLRNLDILFNFPQMSATGNDQSIFNSGIMVIEPSNCTFSVLMSRRHDIVSYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWANTTIEASVKNGLFGADPPKLYAIHYLGLKPWHCYRDYDCNWDVVDQRVYASDVAHQRWWNFHDGMDKKLQGFCRLTRQRRTELNWERRRSNKMGSLDYHWKINVTDPRKSGSLLMD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00402 597 Pfam Glycosyl transferase family 8 307 513 IPR002495 GO:0016757
Tsu01g00402 597 CDD GT8_Glycogenin 302 546 - -
Tsu01g00402 597 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 300 550 IPR029044 -
Tsu01g00402 597 SUPERFAMILY Nucleotide-diphospho-sugar transferases 302 551 IPR029044 -
Tsu01g00402 597 PANTHER GLYCOGENIN SUBFAMILY MEMBER 7 590 - -
Tsu01g00402 597 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 7 590 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00402 Tsu-Chr1 3352180 3356089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00402 75 596 Glycosyltransferase AT4G33330 68.173 0.0 760
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00402 01 3352180 3356089 Tsu01g00402 01 3352180 3356089 ECH