Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00388 ATGCAAGCTTGGGGGAGGTTAGGAGGTTACATAAGACGCGGCGTGTGCAGTGTTTCCGGTCCATTTCTTCCGTTTGGTGGCGCGGTTGATATAATTGTTGTTCAGCAGAAAGATGGGAGTTTTAAATCATCTCCTTGGTATGTTAGATTTGGGAAATTACAAAGGGTTATGAAAGCGGCGAAAAGGGAAAAGGTTAAGGTTAGTGTTAGTGTTAATGGGGTTGAAACTGATTTTCATATGTGTTTGAATCCTAAAGGGGAAGCTTTTTTTCTTCATGCAAATTCACAACATGGGgaaggaggagaagaagaaCAAATGGAAGAATTACTAGAACAAGATGAAGATGGAACAGAATTGTGGTCTTATGATGATATAGAGGTGAGAGGTACTACTAATAAGAGGATAAAGTCgaaaagttgcaattttgattCGGAAAGGTTGAGTTCTGAGGATCAGGTTCAGGTTGTAGCTGGGACGGGTTCTCGTAGTTCGAGAATATATAGGTTTGTATTTGGGCCAAGTTCTAATGGTGACGGTGAAGATGCTGATGGAGATTTAGTGGAGCGTGCTGAGATTGCAGCTAAGTTGTTGGAGTTAAGGTGGTCTACGAATCTCACTTTTGATGAACTTCCATATAGGGAAAGAAGGAAATCTCAGGGTGATGACTTGGACAAAGAGAAAGCCAAGTCTGAATCTGGTAATGTTTTGCGTGCTACGACTCTGCAGCTACCTCAGGGTGGAAAATCTGAGAGAGTAACTATTAAGATGCCGCTGACGGATTATGGTATTTGTGATGTTGCGGATGTTGGAAACATAGCAAAGCTTCAAAAATCTCGAACTGTCAATATTGGTCGAAGGGATTGTTCTGTTAAGAAGGTTAGCATAAATACTCCAACGTCTGAACAACTGTCGTCCTTGAATCTGAAGGAAGGAAGGAACACAATAACCTTCTGTTTCTCTACACCTATGATGGGGAAGCGGCAGaTTGACGCTCGAATATTTTTGTGGAAATGGAATACGCGTATAGTGATATCAGATGTGGATGGAACAATTACAAGGTCAGATGTTTTAGGTCAATTCATGCCTTTAGTAGGGATTGACTGGTCACAGTCAGGTGTTGCTCATTTATTTTCAGAAATCAAGGAAAATGGCTACCAGATACTTTTTCTCAGTGCTCGTGCAATTTCTCAGGCACATCACACCAGACAATTCCTATTGAACCTTAACCAGGACGGGAAAGTCTTGCCAGATGGTCCTGTTGTTATTTCCCCCGACGGACTTTTTCCTTCTCTGTATAGAGAAGTTATCCGCAGAGCTCCTCACGAGTTCAAAATTGCATGTTTAGAGGACATCAGGGCACTTTTCCCACCTGATTACAATCCGTTCTATGCTGGTTTTGGAAATAGAGACACCGATGAAATCAGCTACCTTAAGGTTGGAATTGCTAAAGGAAAAATATTCATTATTAATCCCAAGGGTGAGATTTCTGTAAACCAACGTTGTTTAGACACAAAATCATACACTTCTCTTCATGCTCTCGTGCATGGAATGTTCCCCCCGACAGAATCATCTGAGCaggtctctctctctctctctcatatgTCATAA 1608 0.4005 MQAWGRLGGYIRRGVCSVSGPFLPFGGAVDIIVVQQKDGSFKSSPWYVRFGKLQRVMKAAKREKVKVSVSVNGVETDFHMCLNPKGEAFFLHANSQHGEGGEEEQMEELLEQDEDGTELWSYDDIEVRGTTNKRIKSKSCNFDSERLSSEDQVQVVAGTGSRSSRIYRFVFGPSSNGDGEDADGDLVERAEIAAKLLELRWSTNLTFDELPYRERRKSQGDDLDKEKAKSESGNVLRATTLQLPQGGKSERVTIKMPLTDYGICDVADVGNIAKLQKSRTVNIGRRDCSVKKVSINTPTSEQLSSLNLKEGRNTITFCFSTPMMGKRQIDARIFLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQSGVAHLFSEIKENGYQILFLSARAISQAHHTRQFLLNLNQDGKVLPDGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIRALFPPDYNPFYAGFGNRDTDEISYLKVGIAKGKIFIINPKGEISVNQRCLDTKSYTSLHALVHGMFPPTESSEQVSLSLSHMS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00388 535 Pfam lipin, N-terminal conserved region 25 97 IPR007651 -
Tsu01g00388 535 Pfam LNS2 (Lipin/Ned1/Smp2) 297 519 IPR013209 -
Tsu01g00388 535 PANTHER LIPIN 276 526 IPR026058 -
Tsu01g00388 535 PANTHER LIPIN 1 229 IPR026058 -
Tsu01g00388 535 SUPERFAMILY HAD-like 335 482 IPR036412 -
Tsu01g00388 535 MobiDBLite consensus disorder prediction 216 232 - -
Tsu01g00388 535 SMART lns2 342 498 IPR031315 -
Tsu01g00388 535 MobiDBLite consensus disorder prediction 216 237 - -
Tsu01g00388 535 PANTHER GH19076P 1 229 - -
Tsu01g00388 535 PANTHER GH19076P 276 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00388 Tsu-Chr1 3261489 3267405 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00388 01 3261489 3267405 Tsu01g00388 01 3261489 3267405 ECH
Tsu01g00388 01 3261489 3267405 Tsu07g00962 07 7923100 7930248 PCT