Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00385 ATGTCTAATAAGAatgaacatcatcatcatcaaacggTTCCTCTTTCGGTTCTTTTGAAGCGTGAATTGTTGAGTGAGAAAATTGAAAACCCTGATATTGTTCATGGTCAAGCTGGGCAAAGCAAGAAAGGAGAGGATTTTACGCTGTTAAAATCCGACTGTCAGAGGATGGTTGGTGATGGGGTCTATACGTATTCTGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAATCttctaaataatattttaagtgcAATTCCTCCAGATCTTAACAGAGATGAATGGTTAGCAGCGTTGCCTAGAGCTATGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTGCTGAGAAAGGACAAAAATCGGGGACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACGGTTGCATCAGTTGGTGATTCCCGTTGCGTACTAGAATCTTCTGAAGGAGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAAAGGGTTCGTATCACTTCTAGTGGGGGCGAGGTTGGTCGTTTAAATACAGGGGGAGGCGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCCTGTGTCTTTCACGATCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCACATGTAAAACAAGTGAAGCTATCCACTGGTGGAGGCCGGCTTGTTATCTGTAGTGATGGTGTCTGGGATGCTTTAGCTGCAGAAGTGGCCCTTGATTGTTGCCGCGGCATGTCAGCAGAGTCTTCTGCACCACAGATTGTAAAGGAAGCTATACAAGCAAAAGGACTTAGAGATGATACAACCTGCATTGTTGTTGATATATTACCTCAGGAGAAGCCACCTGCTCCTGCACCACAACCAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCGGAATCATCTTCTATTGACAAAGAATACTTGGAGCCAGATGTGGTAGTGGAGCTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTATGCAACATGTTTAAGTTGTTCATATGTGCAGTATGCCAAGTAGAAATAAAACCCGGAGAGGGCATTTCCGTACATGAGGGTGCAGAAAACCCTCGAAAAGTGCGTCCTTGGGATGGACCTTTCCTTTGTTTTAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAAAGAGCATCAGATAGAAATAGCAGCGGAAGTGACGAATGA 1293 0.4223 MSNKNEHHHHQTVPLSVLLKRELLSEKIENPDIVHGQAGQSKKGEDFTLLKSDCQRMVGDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNILSAIPPDLNRDEWLAALPRAMVAGFVKTDKDFAEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPHVKQVKLSTGGGRLVICSDGVWDALAAEVALDCCRGMSAESSAPQIVKEAIQAKGLRDDTTCIVVDILPQEKPPAPAPQPKKPVKGMLKAMFRKKSSESSSIDKEYLEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGAENPRKVRPWDGPFLCFSCQEKKEAMEGKRASDRNSSGSDE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00385 430 PANTHER ALPHABET, ISOFORM E-RELATED 7 425 - -
Tsu01g00385 430 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 7 425 - -
Tsu01g00385 430 MobiDBLite consensus disorder prediction 411 430 - -
Tsu01g00385 430 Gene3D - 34 302 IPR036457 -
Tsu01g00385 430 ProSiteProfiles PPM-type phosphatase domain profile. 30 296 IPR001932 -
Tsu01g00385 430 SMART PP2C_4 24 294 IPR001932 -
Tsu01g00385 430 CDD PP2Cc 39 296 IPR001932 -
Tsu01g00385 430 SUPERFAMILY PP2C-like 34 296 IPR036457 -
Tsu01g00385 430 Pfam Protein phosphatase 2C 60 285 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00385 Tsu-Chr1 3243716 3249413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00385 1 429 PP2C-type Phosphatase Gene Family AT1G47380 76.798 0.0 701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00385 01 3243716 3249413 Tsu01g00385 01 3243716 3249413 ECH
Tsu01g00385 01 3243716 3249413 Tsu07g00964 07 7942992 7947213 PCT