Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00374 atggagggagtcaCAAATTTATCTGTTGAACAAATTCAACCACCTACTTATGGAAACTTGGTAACAATTCTTAGTATTGATGGTGGTGGTATTAGGGGACTCATTCCTGCTGCAATTATTGAATTCCTTGAATCTCACCTTCAGGAATTGGATGGTGAAGATGCAAGGCTTGCAGACTACTTTGATGTGATATCAGGAACAAGTACAGGAGGTCTTGTAACTGCCATGTTAGCTGCTCCAGATAAAAACAATCGTCCACTTTTTGCTGCCAAAGATATCAAGCCTTTTTACCTTCAACATTGCCCAAAAATTTTCCCACAACCTAGAGGCCTAGGTGGGCTATTATTAGCAAAGGTAATGAGATCTCTTGGAGGACCCAAATATGATGGAAAATATCTTCATGAGGTTGTAAGAGAGAAACTTGGAGACATTAAGTTGCATGAGACCATCACCAACATTGTTATTCCTTCATTTGACATCAAGACTTTGCAGCCAATTATTTTTTCATCTTATCAGCTTAAGAAATCTCCTATTTTGGATGCTAAACTCTCAGACATATGCATTAGTACCTCAGCTGCACCTACTTATCTTCCTGCTCACACCTTCACAAATAAAGTTGAAGAAACCGGAAAAGAAGAGGAGTTCGAGTTCAATCTCATTGATGGCGGTGTTTGTGCAAATAACCCGGCTTTAGTTGCCATGAACGAAGTAACAAagcaaatcatcaatcaaagtcCTGATTTCTTCCCCATCAAGCCTCTTGAATATGGTCGGTTTCTGATAATTTCTATAGGCACTGGGACAgcaaaaaatgaggaaaaattCACTGCACAAATGGCAGCCAAATGGGGTTTATTGGATTGGCTAACACATAGTGGTTCTAATCctttaattgatgtttttacTCAATCAAGTGGTGATATGGTTGATTTTCATTTATCTGCTGTCACTCAAGCTCTTCATTCAGAAGATAATTACCTCCGAATTCAGGATGACACATTAACTGGAATAGATTCTTCTGTTGACATTGCTACTGAGGCGAACTTGAATAAACTATGTCAAATTGGTGAGAATTTATTGAAGAAACCAGTTTCTAGAGTCAATTTAGAAAATGGACACTTTGAACCACTAACAACTGGAGAAACTAATGAAGATGCTCTCAAGAGGTAA 1170 0.3632 MEGVTNLSVEQIQPPTYGNLVTILSIDGGGIRGLIPAAIIEFLESHLQELDGEDARLADYFDVISGTSTGGLVTAMLAAPDKNNRPLFAAKDIKPFYLQHCPKIFPQPRGLGGLLLAKVMRSLGGPKYDGKYLHEVVREKLGDIKLHETITNIVIPSFDIKTLQPIIFSSYQLKKSPILDAKLSDICISTSAAPTYLPAHTFTNKVEETGKEEEFEFNLIDGGVCANNPALVAMNEVTKQIINQSPDFFPIKPLEYGRFLIISIGTGTAKNEEKFTAQMAAKWGLLDWLTHSGSNPLIDVFTQSSGDMVDFHLSAVTQALHSEDNYLRIQDDTLTGIDSSVDIATEANLNKLCQIGENLLKKPVSRVNLENGHFEPLTTGETNEDALKR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00374 389 Pfam Patatin-like phospholipase 24 234 IPR002641 GO:0006629
Tsu01g00374 389 PANTHER PATATIN 1 389 - -
Tsu01g00374 389 PANTHER XYLOSE ISOMERASE 1 389 - -
Tsu01g00374 389 Gene3D Cytosolic phospholipase A2 catalytic domain 10 389 - -
Tsu01g00374 389 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 24 234 IPR002641 GO:0006629
Tsu01g00374 389 CDD Pat17_isozyme_like 18 372 - -
Tsu01g00374 389 SUPERFAMILY FabD/lysophospholipase-like 19 370 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00374 Tsu-Chr1 3187500 3190607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00374 12 387 Miscellaneous Gene Families AT2G26560 66.489 3.02e-176 495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00374 01 3187500 3190607 Tsu01g00374 01 3187500 3190607 ECH