Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00368 ATGCAACAATCAAACGGTTCTGATTCATCGACGCAACAAAACCAACCGGAGACGAACAAACAACGGCAACAAACACCGCAACCGGTTGCGGTACCACAACAGTGGGTTCCGATGCAGTATCCAACGGCGATGGTAATGCCACATCATATGATGCCACATCAGCATTACGCGCCGCCGCCTTATGTTCCTTAtcaccaccatcaccaccatCAGTATCAACAACCGTTGCACGTGCCACATCAGCAGCATCagaatcatcaacaacaacatggATCCAATGGTGAAAATAAGACTCTCTGGATTGGTGATTTACATAACTGGATGGATGAAAATTATCTTCATCGCTGTTTTGCTTCTACCGGCGAGatTTCCTCCATCAAGGTTATTCGCAATAAGCATAGTGGTATTTCAGAGGGTTATGGATTTGTGGAATTTTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTTCAATTTTGATGCCAAATGCTGATCAAATGTTCCGTTTGAACTGGGCTACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACCTTTGCTAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTCGTCAGGTTTGGAGATGAAAATGAGCGATCTCAGGCCATGACTCAAATGAATGGCGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAGGCAGACATTCTCCCAGTATGGTGAGATAGCATCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTGCAATTTGCAAACAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTAAATGGGACAATGATCGGCAAGCAAACCGTTCGTCTCTCTTGGGGCCGCAATCCAGCAAATAAACAgCTTAGGTTTGACTTCGGAAGCTGGGCTGGGCCATATTTTCCATCCCCTATTTATGACGGATACGGATATGCAATTCCTTCTCCTCATCATGATCCAAGCACATATCCTCTAGCTTATGGAGGTTATCCCATTTATGGAGGCCACCAACAACAAGTAAGCTGA 1278 0.4218 MQQSNGSDSSTQQNQPETNKQRQQTPQPVAVPQQWVPMQYPTAMVMPHHMMPHQHYAPPPYVPYHHHHHHQYQQPLHVPHQQHQNHQQQHGSNGENKTLWIGDLHNWMDENYLHRCFASTGEISSIKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYASILMPNADQMFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFASSYPSVKAAKVVYDANTGRSKGYGFVRFGDENERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQLRFDFGSWAGPYFPSPIYDGYGYAIPSPHHDPSTYPLAYGGYPIYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00368 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 424 - -
Tsu01g00368 425 Gene3D - 189 265 IPR012677 -
Tsu01g00368 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Tsu01g00368 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Tsu01g00368 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Tsu01g00368 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Tsu01g00368 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 424 - -
Tsu01g00368 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Tsu01g00368 425 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g00368 425 MobiDBLite consensus disorder prediction 60 94 - -
Tsu01g00368 425 MobiDBLite consensus disorder prediction 270 301 - -
Tsu01g00368 425 Gene3D - 272 373 IPR012677 -
Tsu01g00368 425 SUPERFAMILY RNA-binding domain, RBD 191 368 IPR035979 GO:0003676
Tsu01g00368 425 MobiDBLite consensus disorder prediction 265 302 - -
Tsu01g00368 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 159 IPR000504 GO:0003723
Tsu01g00368 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Tsu01g00368 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Tsu01g00368 425 CDD RRM2_SECp43_like 189 268 - -
Tsu01g00368 425 SUPERFAMILY RNA-binding domain, RBD 64 176 IPR035979 GO:0003676
Tsu01g00368 425 MobiDBLite consensus disorder prediction 75 94 - -
Tsu01g00368 425 CDD RRM1_SECp43_like 98 178 - -
Tsu01g00368 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Tsu01g00368 425 MobiDBLite consensus disorder prediction 1 32 - -
Tsu01g00368 425 Gene3D - 62 188 IPR012677 -
Tsu01g00368 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00368 Tsu-Chr1 3129290 3134105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00368 72 375 Eukaryotic Initiation Factors Gene Family AT4G34110 27.184 2.56e-31 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00368 01 3129290 3134105 Tsu01g00368 01 3129290 3134105 ECH
Tsu01g00368 01 3129290 3134105 Tsu07g00977 07 8028388 8041799 PCT