Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00367 ATGTGCCCTTGTCACAGCCTCACAGGGATTAGGATTCCTTTGTATTCATGTCTTCATATTATTATTGGTACCAAATTAGATTTAACTCGGCCCATTTCCCTTGTGGGGAACCTTTATAAAATCTTGGCGAAGGTCTTAGCTAACCGGCTTCGCTTGGTGGTGGGAAGTGTGATTTCGGAATCTCAGTCAGCGTTCGTAAAGGGCAGACAAATCCTTGATGGAATCCTAATTGCAAATGAGGTGGTTGATGAGGCTCGGCGGTCCAAGCAGGACTTGATACTgtttaaagtggattttgaaAAGGCCTATGATTCGGTAGATTGGGGTTACTTGGATTTTGTGATGGGAAGAATGGGCTTCCCAACCCTCTGGAGGAAATGGATTAGAGAATGTGTATGTACGGCTACATCGTCTGTCTTGGTCAATGGAAGTCCAACTGACGAATTTCCTCTTGAGAGGGGCTTACGGCAAGGCGATCCTCgatctccttttctttttttactggCTGCTGAGGGTTTACATGTGTTGATGGAGGCACTGGTGGAGCGTAATTTATTCTCATGGTATAGTATGGGTATGGAAGCCCCGGATTTGGTTTCGCATCTTCAGTTTGCCGATGATACGCTTTTTATGGGGACTAAAAGCTGGGCGAACGTTCGTGCTTTGTGGGCTGCCCTAGTGTTGTTCGAGTCAATGTCAGAGTTAAAGGTTAATTTCAATAAAAGCTTGCTGGTTGGGGTTAATATCCCGGATTCTTGGTTAGGTGAAGCGGCGTCAGCTCTGAGTTGTCGTGTGAGAAAAAATCCTTTCCTTTATTTGGGCCTTTCGATTGGGGGTGATCCGAGACGTATTAGTTTTTGGAAACCGGCGTTGGATCGTTTAAAGAGTCGGTTATCAGGAAAATGGTGGTGGAGGATGTTAGTGGAGAGGGACAACTTGTGGTTACGAGTCTTGGCGGCTAGGTATGGGGTGGAACATACTTCAGACAGCTGGCAGTGGCAGCCTGGTTTGGATAGTGGTTTCACTGTTCGTGGTGCTTATCAACTTCTGACGGAGCAGGTCGTGGCCCCTTTAGATGGTGCAGCAGTGTGCCACTTTCCAATCTCATGCAAAGCCAACAAACAAAGTGAATACCTCTACAAATTTATTCAATCAAAGAGGTTTCAACAAAAGGCTTCTTCACATGGAAAAGCTTATTATTTAAGTGCTTTTGTAGATGAACATGTTCCAAAGGTACATGTTGAACAACAATTAAGTTTGATGAAAGCTGATAAGGTGAAGGCTTTGCCTGGACAACCAAAAGGGGTGAATTTTGATCAATATGCTGGCTATGTAACTGTGGATGCAAAAGCAGGGAGAGAACTTTTCTATTACTTTGTTGAATCACCTTTAAATTCTTCCACAAAGCCTCTTATTCTATGGCTAAATGGAGGACCTGGATGCTCTTCATTTGGGTATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTCAATAGTGATGGAAGGACCCTTTCCCTTAATAAAGATTCATGGAATAATGTGGCAAATGTTATCTTCCTAGAGTCACCAGTAGGAGTTGGATTTTCCCATTCAAACAAACCTTCAGATTACTCTAACATTGGTGACAATAGCACAGCCAGAGATTCttacatttttcttctaaactggCTTGAAAGATTTCCGCAATACAAGACTCGAGATTTCTTCATAGCCGGTGAAAGTTATGCTGGCCATTATGTTCCTCAATTAGCTCACCTTATCCTCTCAAATAATAAGAAAACGAAACATCACACAGTtatcaatttgaaaggaatcGCGGTTGGGAACGGTTGGATAGACGACAATTACTGTACAAAGGGAATGTATGACTATTTCTGGATGCAGTCtctaaactctgatgaaactcATCAAGGAATTGATAAACTTTGTGACTTTAGGAACTTCAACTTAACAAATGAATGTGTAGGATATCAAAATAAAGCGGACGATGAGCTTGGAAATATTAACCTTTACAACATATATGCCCCACTTTGTAATTCATCTGGAACAAAAACTAGTTACTCTGGCAGTGATTTTGACCCTTGTTCCGAAGATTATACAGTtgcctacttaaatctacctaAAGTTCAAAAGGCTCTTCATGCTAAAGCCAGAAAATGGTCTTCTTGCAGTGACCTGAGTTGGACAGATAGCCCAGCAAGTATTCTACCAACTATAAATAGATTAATATCAAGTGGTATAAGCATTTGGATATATAGTGGTGATATAGATGGCCGTGTTCCCATAACATCAACAAAGTATTCAATAAATTCCTTAAACCTACCTGTAAATACAGCATGGCGCCCATGGTACACCGGCAAAGAGGTCGGAGGATATGTGATTGGTTACAAAGGGCTCACACTTGTCACTGTAAGAGGAGCAGGGCATATGGTTCCAAGTTACCAATCACACAGAGCACTATCCATGATTTCATCTTTCCTTCATGGACAACTTCCTCCGGAATCAAACTCTTATAACTCTATTcaataa 2529 0.4021 MCPCHSLTGIRIPLYSCLHIIIGTKLDLTRPISLVGNLYKILAKVLANRLRLVVGSVISESQSAFVKGRQILDGILIANEVVDEARRSKQDLILFKVDFEKAYDSVDWGYLDFVMGRMGFPTLWRKWIRECVCTATSSVLVNGSPTDEFPLERGLRQGDPRSPFLFLLAAEGLHVLMEALVERNLFSWYSMGMEAPDLVSHLQFADDTLFMGTKSWANVRALWAALVLFESMSELKVNFNKSLLVGVNIPDSWLGEAASALSCRVRKNPFLYLGLSIGGDPRRISFWKPALDRLKSRLSGKWWWRMLVERDNLWLRVLAARYGVEHTSDSWQWQPGLDSGFTVRGAYQLLTEQVVAPLDGAAVCHFPISCKANKQSEYLYKFIQSKRFQQKASSHGKAYYLSAFVDEHVPKVHVEQQLSLMKADKVKALPGQPKGVNFDQYAGYVTVDAKAGRELFYYFVESPLNSSTKPLILWLNGGPGCSSFGYGAMQELGPFRVNSDGRTLSLNKDSWNNVANVIFLESPVGVGFSHSNKPSDYSNIGDNSTARDSYIFLLNWLERFPQYKTRDFFIAGESYAGHYVPQLAHLILSNNKKTKHHTVINLKGIAVGNGWIDDNYCTKGMYDYFWMQSLNSDETHQGIDKLCDFRNFNLTNECVGYQNKADDELGNINLYNIYAPLCNSSGTKTSYSGSDFDPCSEDYTVAYLNLPKVQKALHAKARKWSSCSDLSWTDSPASILPTINRLISSGISIWIYSGDIDGRVPITSTKYSINSLNLPVNTAWRPWYTGKEVGGYVIGYKGLTLVTVRGAGHMVPSYQSHRALSMISSFLHGQLPPESNSYNSIQ 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00367 842 ProSitePatterns Serine carboxypeptidases, serine active site. 570 577 IPR018202 GO:0004185
Tsu01g00367 842 Gene3D - 735 829 - -
Tsu01g00367 842 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 29 276 IPR000477 -
Tsu01g00367 842 SUPERFAMILY alpha/beta-Hydrolases 426 830 IPR029058 -
Tsu01g00367 842 CDD RT_nLTR_like 30 277 - -
Tsu01g00367 842 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 364 831 IPR001563 GO:0004185|GO:0006508
Tsu01g00367 842 Pfam Serine carboxypeptidase 430 829 IPR001563 GO:0004185|GO:0006508
Tsu01g00367 842 Gene3D - 695 726 - -
Tsu01g00367 842 PRINTS Carboxypeptidase C serine protease (S10) family signature 507 519 IPR001563 GO:0004185|GO:0006508
Tsu01g00367 842 PRINTS Carboxypeptidase C serine protease (S10) family signature 556 581 IPR001563 GO:0004185|GO:0006508
Tsu01g00367 842 PRINTS Carboxypeptidase C serine protease (S10) family signature 520 530 IPR001563 GO:0004185|GO:0006508
Tsu01g00367 842 PRINTS Carboxypeptidase C serine protease (S10) family signature 799 812 IPR001563 GO:0004185|GO:0006508
Tsu01g00367 842 Gene3D alpha/beta hydrolase 421 680 IPR029058 -
Tsu01g00367 842 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 277 IPR000477 -
Tsu01g00367 842 ProSitePatterns Serine carboxypeptidases, histidine active site. 799 816 IPR033124 GO:0004185
Tsu01g00367 842 PANTHER CARBOXYPEPTIDASE 364 831 - -
Tsu01g00367 842 SUPERFAMILY DNA/RNA polymerases 28 323 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00367 Tsu-Chr1 3111875 3127262 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00367 01 3111875 3127262 Tsu01g00367 01 3111875 3127262 ECH