Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00355 ATGGGAGGAGGAAGCAAATCTTGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATTCATTTCACACAATTTCTCACCACTCATTTTCAACAACATCTTGCACTTCccaaaacattttcaaacaatGTAAAGAAGAAATTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAAGGTAGGGCTGACTTCTAGAGACGATACCTTGTACTTCACGAGCGGTTGGCAACAATTTGTGAAAGACCACTCTTTGAAAGAGAATGATGTCCTTGTCTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGGTGGAGAAAGTTTATGTGAGAAAGCAGCTtcttattttgtaaaaaaatgtggACATGCTCAAACTGAACAAGGAGGTAGCAAGACAAAGGACTCAAAAACTGCTACTGAAGAAGTCATTAATACTGCTTCTAATGGTGCTGTCGAATGTGGACATAACAATGGTGGCTGCAAATCATGGCAGGAAGATATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTCAAAACTGATTTTCAACAACATCTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTATGTGGAATGTAGTGCTGAAACCTAGAGACGGTACCTTGTACTTCATGAACGGTTGGCAAGAATTCGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGTTTCTGCGAGAAAGCAGCTTCTTATTTTGTTGGAAAATGTGGAGATGCTCAAACTGAACAAGGGGATAGCGAGGCAAAGGAAACAAacaattttgttgaagaaatcaATGCTGCTTCTAATGGTGGTTTTGAATGTGGTTCACCTGAGAAATTTCAGTGTCTTAATAGTGGGAATGTTCCTACCGAACAAGGAGGTTGCGAGGGAAATGGCACAAACAATTGTGTTGAAGAAGTCAATACTGCTTCTAATGGTGGTGTTGAATGTTGTACACCTCTGAAATTTAAGTCTGTTAACAGTATAAAAACGCCATTAGTTGCACCTTATAAAACTAGCCATGAGAAGGCTTTTAATGGTGGTGTTGAATCTGCTTCCCCTGAACAGTTCATGGCGGATACAGTCACTAAGACCACACCTGTAGTGTTTCACTTCCATCCTACTGGAAAAAGGACCAAGAGGCCTTTTAATGAAGTTATGTCTATCCCAAGTAAGAGGAGAAAAGGATCACCAAAAGCAGCTAATTCTTGGCAGAGAGGACTAGATTGGCTAGCTGCTTGTAACAAGGAACACTCAGAAGCAGCCATCCTGTATAGAAGTGGGAAGGACGATGACCATTATATTCTCAGTGGAGCTTCACTGTCAACGCTATCAGCACGTGATGAGAAAAAGATAGCACAATCATTTACCTCCTCTTTTccatattttgtcaaaataatccAAACGTTCAATGTCAATGGGTCACGAATTCTGAATATACCTTATCAATTTTCGAGGAGACATCTTCCAAACTGCAACATAAAGATTATTCTTCATAATTTGAAGGGAGAACATTGGACCGTTAATTCTGTTGCTAGAACTAGAGTACATACAAATCACATTCTATGTGGAGGATGGGTGGATTTTGTTCGTGGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTGATACGTGAGTGTGAATTACGTGTTCATATCGCTGAGATTGAAAAAGATGGACTAGACTCCCAGATTGAAAAAATAGCTTCTAGTATGCTTACTGCAAGACATGATGTCGCTTGCCGTAAGACTTCCAGATATATGCCAAAGAATCCTAAAGTCAGCTCAATGTGCAGAAACAAGGTTGACCTATCAAATAAAAAGTTGTCAAAGATTGGTCAAGGAGCCGCTTTATCCATCTTAAAAAAATACAGTAGAGCTTCAAATACTTCGAAGAAGATGGGGATTTGTCCAAAGTCGAAAGCAGTCCATAAAAAGTTGGCTGTGCGGAGGAAACATCGTGTTGAAAAAGATCTAAGCATCCAGGCTAAAGCTGGTGTGAGAAAGTTGTGTACACTCAACGAACAAAGAGTAGCTGATGCTTTTGGTTCCCCATTTCCTAATTTCGTGAAAATCATGAAGAACTTCAATGTCAGCGGATCATTCACTTTGAAAATCCCAAATCGGTTCTCTGTTGAACATCTCCCCGCCTACAAAACAGAAGTTACGCTTCGCAATTCAAGTGGCAAATGTTGGACTGTGAACTCTGTCCCAGATGCTCAATTGAGAAAAAATCACACGTTTTGTGGGGGTTGGAACACCTTTGTTCGTGATAATGACATAAATATTGGCGACACGTGCATATTTGAGCTCGTTTCTCAATATGTGATGCAGGTTTATATATCTGGTGTTGGGAAGGAAGGTTTTGACCATCAAAATGGGAATGTGAAACTCAATAGCTAG 2541 0.3884 MGGGSKSWEEDIYWTHFQFIHFTQFLTTHFQQHLALPKTFSNNVKKKLPENVTLKGPSGVVWKVGLTSRDDTLYFTSGWQQFVKDHSLKENDVLVFKYNGESHFEVLIFGGESLCEKAASYFVKKCGHAQTEQGGSKTKDSKTATEEVINTASNGAVECGHNNGGCKSWQEDIYWTHFQFIHFTQFLKTDFQQHLALPKTFSDNLKKLPENVTLKGPSGVMWNVVLKPRDGTLYFMNGWQEFVKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGDAQTEQGDSEAKETNNFVEEINAASNGGFECGSPEKFQCLNSGNVPTEQGGCEGNGTNNCVEEVNTASNGGVECCTPLKFKSVNSIKTPLVAPYKTSHEKAFNGGVESASPEQFMADTVTKTTPVVFHFHPTGKRTKRPFNEVMSIPSKRRKGSPKAANSWQRGLDWLAACNKEHSEAAILYRSGKDDDHYILSGASLSTLSARDEKKIAQSFTSSFPYFVKIIQTFNVNGSRILNIPYQFSRRHLPNCNIKIILHNLKGEHWTVNSVARTRVHTNHILCGGWVDFVRGNGIKVGDVCIFELIRECELRVHIAEIEKDGLDSQIEKIASSMLTARHDVACRKTSRYMPKNPKVSSMCRNKVDLSNKKLSKIGQGAALSILKKYSRASNTSKKMGICPKSKAVHKKLAVRRKHRVEKDLSIQAKAGVRKLCTLNEQRVADAFGSPFPNFVKIMKNFNVSGSFTLKIPNRFSVEHLPAYKTEVTLRNSSGKCWTVNSVPDAQLRKNHTFCGGWNTFVRDNDINIGDTCIFELVSQYVMQVYISGVGKEGFDHQNGNVKLNS 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00355 846 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 636 842 - -
Tsu01g00355 846 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 167 617 - -
Tsu01g00355 846 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 5 148 - -
Tsu01g00355 846 Pfam B3 DNA binding domain 31 109 IPR003340 GO:0003677
Tsu01g00355 846 Pfam B3 DNA binding domain 507 599 IPR003340 GO:0003677
Tsu01g00355 846 Pfam B3 DNA binding domain 192 270 IPR003340 GO:0003677
Tsu01g00355 846 Pfam B3 DNA binding domain 735 819 IPR003340 GO:0003677
Tsu01g00355 846 ProSiteProfiles B3 DNA-binding domain profile. 507 603 IPR003340 GO:0003677
Tsu01g00355 846 SUPERFAMILY DNA-binding pseudobarrel domain 17 110 IPR015300 -
Tsu01g00355 846 SUPERFAMILY DNA-binding pseudobarrel domain 500 600 IPR015300 -
Tsu01g00355 846 ProSiteProfiles B3 DNA-binding domain profile. 735 831 IPR003340 GO:0003677
Tsu01g00355 846 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Tsu01g00355 846 SMART B3_2 735 831 IPR003340 GO:0003677
Tsu01g00355 846 SMART B3_2 183 272 IPR003340 GO:0003677
Tsu01g00355 846 SMART B3_2 22 112 IPR003340 GO:0003677
Tsu01g00355 846 SMART B3_2 507 603 IPR003340 GO:0003677
Tsu01g00355 846 SUPERFAMILY DNA-binding pseudobarrel domain 728 829 IPR015300 -
Tsu01g00355 846 CDD B3_DNA 21 109 IPR003340 GO:0003677
Tsu01g00355 846 Gene3D - 489 603 IPR015300 -
Tsu01g00355 846 Gene3D - 718 830 IPR015300 -
Tsu01g00355 846 Gene3D - 15 115 IPR015300 -
Tsu01g00355 846 Gene3D - 176 275 IPR015300 -
Tsu01g00355 846 CDD B3_DNA 733 826 IPR003340 GO:0003677
Tsu01g00355 846 ProSiteProfiles B3 DNA-binding domain profile. 180 272 IPR003340 GO:0003677
Tsu01g00355 846 SUPERFAMILY DNA-binding pseudobarrel domain 179 270 IPR015300 -
Tsu01g00355 846 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 636 842 IPR044837 -
Tsu01g00355 846 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 167 617 IPR044837 -
Tsu01g00355 846 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 148 IPR044837 -
Tsu01g00355 846 CDD B3_DNA 505 599 IPR003340 GO:0003677
Tsu01g00355 846 CDD B3_DNA 183 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00355 Tsu-Chr1 2973313 2997455 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00355 B3 4.1e-14 CL0405