LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00350	ATGCTAAAAGGTGAAATCGTTGGTTCCAAAAGCGCCAGGCACAGCACCACCGCCGCGGTATCGTCGAATAAAGTTCTTGTGGCGGTTAAAGCGGAGAAGGTGATCTCTAACACCGCATTAGCATGGGCGCTTACTCACATCGTTCATTCCAGCGACTCAATCACACTTCTCGCCGTTTATTCAACCGAAAAAACCGGAAGAAGATTCTGGAATTTTTCAAGACTAGTGGCCGGAGATTGTTCGAATGGACGCGCGGGAAAGTCGCCGGAGGAGATTTCTGATATATCTGAGTCTTGTGCTCAGATGGTTTTTCAGTTGCACAATCACATTGAGGTTAGAGTGAAGATTAAGGTAGTCACGGGAACTCCCAGTGGTGCTGTGGCGGCTGAAGCTAGATGGAGTGGTTCACATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGATAAAACATTGCATGGACGAACTCAGCTGTAGCATTGTCGAGATGAATGGCTCACAGCCTAAAGTCCTCAGACTTAATTTAGGAGGACACTCCGATGAACTCCAAACtccatttttctcttcttcctcttcaccAGGTATAGAAATTGGAAAGCTAAAAGGCCGCAGATTGAAGCATTCCACCCCAGTTGGTAGCCCTGAAGTAACAGGTTCTTCTGTTACAAGAAGTATTGGAGTAGATTCAGTGTCAAGTTCAGACTCAATGACCTCTCCTTTCCTAGTCTATAAAGAAAACCCTCTGTATGAGGGTCATGGATCACACAAAACAACAAACAGATCAATCAATAAGCCAAAAGATTTCAACTTCCAACCATCATTGTACTTTAACTTGGATAGGGATAGCCCACCCCCTCCAAGGAAACTCCCAACGTCATCTCTGACTAGTAATAAGAACACTGAATTTTGGATCCATCAGAACCACATTAATAATGAGAAGCTTCAAAGAGCTGAAAACAGAACTAAATCTCCAAATTCAAAAACTTTACTTGAGAATTTTTTACACTGTGATCAAGAGAAGAGAACAAATGAAATTGAGTCTAACAAAACTGAAAATAGAAGTTATGTCACCAGCTCAAGCATCAGAGATAGCCCTATTCCTTTGGGTAGAAATTCCTCTATACCTCCTCCCTTGTGCTCACAGTGTCAGAATATAGCACCTGTATTTGGAAATCCTCCTAGACGTTTTTCTTACAGAGAGATCGAAGAAGCTACTGACATGTTCTCAGACTTGAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAGAGGAATACTCAAAGATGGCCAGGTTGTTGCAGTGAAACAATTAAAATCTAGTGGCTCTCAAGCAGATCTTGATTTCTGTAGGGAAGTCCGGGTTTTGAGTTGCGCACAACACAGAAATATTGTATTGCTGATAGGATTTTGCACAGAGGACAATGTGAGGATATTAGTCTATGAGTACGTATGTAATGGATCCTTGGACCTCTGCTTACATGGCAAAGAGGGTATACCTTTGGATTGGAACTCACGGTTAAAGATAGCGATTGGAGTTGCACGAGGCTTGCGCTATCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACATTCGTCCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCTGATTTTGGGCTTGCTAGATGGCAATCAGAATGGAATATAAATACTGAAGATCGCGTTATGGGAACTTCAGGGTACATTGCACCGGAGTATCTTGATTCTGGAATTCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTTTTGTTAGAGTTAATAACAGGTCGAAGAAATAATGAGTTGGAACAGTTCAATGGACATTCGTACCTTTCTGAATGGTTTCACCCCCTACACATGTTGGACCCTAATAATATCTTACAAAACATTGGATCTCTCAACCCATGCTTGGATTCTGAGGGGTCACTAGGATCTAATCTTCAATTGCAAGCCATGGCACAAGCTGCTTCATTGTGTTTACGTTTGGATCCTGATCATAGACCTCCAATTTCAAAGATCCTCAGAGTGCTGGAAGGGGGCAATCCACTTCGTCCGCTGGGTTTAGACATCAATTCAGTTGGTAACACAAGTGGTCGTTTAAGTGGTTTGAGTTCGTATACTCCTCCTAAAGGTACAATAAGCCATTCTCGTATGTTATCACATTGA	2193	0.4159	MLKGEIVGSKSARHSTTAAVSSNKVLVAVKAEKVISNTALAWALTHIVHSSDSITLLAVYSTEKTGRRFWNFSRLVAGDCSNGRAGKSPEEISDISESCAQMVFQLHNHIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEIKHCMDELSCSIVEMNGSQPKVLRLNLGGHSDELQTPFFSSSSSPGIEIGKLKGRRLKHSTPVGSPEVTGSSVTRSIGVDSVSSSDSMTSPFLVYKENPLYEGHGSHKTTNRSINKPKDFNFQPSLYFNLDRDSPPPPRKLPTSSLTSNKNTEFWIHQNHINNEKLQRAENRTKSPNSKTLLENFLHCDQEKRTNEIESNKTENRSYVTSSSIRDSPIPLGRNSSIPPPLCSQCQNIAPVFGNPPRRFSYREIEEATDMFSDLNFLAEGGFGVVHRGILKDGQVVAVKQLKSSGSQADLDFCREVRVLSCAQHRNIVLLIGFCTEDNVRILVYEYVCNGSLDLCLHGKEGIPLDWNSRLKIAIGVARGLRYLHEDCRVGCIVHRDIRPKNILLTHDFEPLVADFGLARWQSEWNINTEDRVMGTSGYIAPEYLDSGILTYKVDVYAFGIVLLELITGRRNNELEQFNGHSYLSEWFHPLHMLDPNNILQNIGSLNPCLDSEGSLGSNLQLQAMAQAASLCLRLDPDHRPPISKILRVLEGGNPLRPLGLDINSVGNTSGRLSGLSSYTPPKGTISHSRMLSH	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00350	730	Gene3D	Phosphorylase Kinase; domain 1	382	483	-	-
	Tsu01g00350	730	Gene3D	HUPs	7	153	IPR014729	-
	Tsu01g00350	730	MobiDBLite	consensus disorder prediction	708	730	-	-
	Tsu01g00350	730	PANTHER	ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE	19	719	-	-
	Tsu01g00350	730	Gene3D	Transferase(Phosphotransferase) domain 1	484	691	-	-
	Tsu01g00350	730	SUPERFAMILY	Protein kinase-like (PK-like)	386	687	IPR011009	-
	Tsu01g00350	730	PANTHER	OS01G0253100 PROTEIN	19	719	IPR045271	GO:0004714\|GO:0006468
	Tsu01g00350	730	MobiDBLite	consensus disorder prediction	342	368	-	-
	Tsu01g00350	730	MobiDBLite	consensus disorder prediction	349	367	-	-
	Tsu01g00350	730	MobiDBLite	consensus disorder prediction	273	295	-	-
	Tsu01g00350	730	Pfam	Protein tyrosine and serine/threonine kinase	414	627	IPR001245	GO:0004672\|GO:0006468
	Tsu01g00350	730	SMART	tyrkin_6	408	686	IPR020635	GO:0004713\|GO:0006468
	Tsu01g00350	730	ProSiteProfiles	Protein kinase domain profile.	408	693	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00350	730	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	529	541	IPR008266	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00350	Tsu-Chr1	2922282	2927290	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Tsu01g00350		PK_Tyr_Ser-Thr	1.2e-41	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g00350	01	2922282	2927290	Tsu01g00350	01	2922282	2927290	ECH