Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00349 ATGTTTGGcgacaaaaaaaacaaaagcaaaaatagCAACAATGGCAATGTTCCTCGTCCTCAGTTCATGCAATCAGAACCCCGATTTTCCACAACGGAAGCCTATACCGATGATGACTACGCCATGCGTAGCAGCAGTGCCGCATCCCCCATTAGCCCTTACAACTATGACCCCGGCAGGTTAAGTGGTGAGGGCTCACCAATGATGATGTCGCCATGGAATCAAACAACAAATTCTCCATTCTCAAAGCCACAATGGTCACAACACGAAGAAGCACCCCCACAGAATTCTCTAATTGGTTCACTGGTTCGTGAAGAAGGTCACATATATTCATTGGCAGCTTCCGGTGACTTGTTATACACCGGCTCAGATAGCAAGAACATTCGTGTGTGGAAGAATCTCCAAGAATATTGTGGATTCAAATCCAACAGTGGATTGGTAAAAGCAATAATAATCTCAGGTCAAAAAATCTTCACCGGTCACCAAGACGGTAAAATCAGAGTTTGGAAAGTTTCTCTCAAGAACCCTAGCGTTCACAAACGCGCTGGAACATTACCAACACTCAAAGATATTTTCAAAAGTTCGATCAAACCAAGCAATTATGTCGAGGTTCGCAAACACAGAACTGCATTATGGATCAAACATTCTGATGCTGTTTCATGTCTCAGTCTTTCTCAAGACAAAAACTACCTCTACTCTGCTTCATGGGATAGAACAATCAAAGTTTGGAGAATCTCCGATTCTAAGTGCTTGGAATCAATTACTTGTCATGAAGATGCTGTTAACTCCGTTGTCTGTGGAAACGACGGAATTGTTTTCTCTGGTTCTGCGGATGGAACCGTTCAAGTGTGGCGTAGGGAAGCACGTGGGAAAGGAACGAAGCACGTGCAGGTTAAACAACTTTTAAAACAAGAATGCGCCGTAACTGCTTTAGCAGTGGATCCCACAGGATCAATGGTGTATTGTGGTGCTTCTGATGGGTTAGTTAATTTTTGGGAATGCAATAAGCAGTTTGCACACGGTGGGAACCTTAAAGGTCATAAACTTGCAGTTTTGTGTTTATCTTCTGCGGGGAATTTGGTATTTAGTGGATCAGCTGATAAAACTATATGTGTGTGGAAAAGAGATGGTGTTATTCACACCTGTGTGTCTGTTTTAACGGGACATGATGGTCCCGTTAAATGTTTAGCGGTGGAACAGGATCGTGAATCTGATGCTAAAAGTGATCCACGGTGGGTATTGTACAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCAGAGAGTCTGCAGCAGCAGGTACGTATGGGTTCTGATGGGGATTCATTACCTTATGAATCTGATAGCAGCAGTTTTTCTTCGAGTCGGACTGGTAATAATAAGAGGAATTAA 1398 0.4235 MFGDKKNKSKNSNNGNVPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPISPYNYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEEAPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSQDKNYLYSASWDRTIKVWRISDSKCLESITCHEDAVNSVVCGNDGIVFSGSADGTVQVWRREARGKGTKHVQVKQLLKQECAVTALAVDPTGSMVYCGASDGLVNFWECNKQFAHGGNLKGHKLAVLCLSSAGNLVFSGSADKTICVWKRDGVIHTCVSVLTGHDGPVKCLAVEQDRESDAKSDPRWVLYSGSLDKSVKVWSVSESLQQQVRMGSDGDSLPYESDSSSFSSSRTGNNKRN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00349 465 MobiDBLite consensus disorder prediction 68 94 - -
Tsu01g00349 465 MobiDBLite consensus disorder prediction 1 94 - -
Tsu01g00349 465 PANTHER PROTEIN JINGUBANG 20 454 - -
Tsu01g00349 465 MobiDBLite consensus disorder prediction 1 52 - -
Tsu01g00349 465 PRINTS G protein beta WD-40 repeat signature 231 245 IPR020472 -
Tsu01g00349 465 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Tsu01g00349 465 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Tsu01g00349 465 CDD WD40 106 427 - -
Tsu01g00349 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 374 IPR001680 GO:0005515
Tsu01g00349 465 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Tsu01g00349 465 Pfam WD domain, G-beta repeat 381 427 IPR001680 GO:0005515
Tsu01g00349 465 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Tsu01g00349 465 Pfam WD domain, G-beta repeat 306 332 IPR001680 GO:0005515
Tsu01g00349 465 Pfam WD domain, G-beta repeat 215 243 IPR001680 GO:0005515
Tsu01g00349 465 Pfam WD domain, G-beta repeat 106 132 IPR001680 GO:0005515
Tsu01g00349 465 MobiDBLite consensus disorder prediction 437 465 - -
Tsu01g00349 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 249 - -
Tsu01g00349 465 SMART WD40_4 379 427 IPR001680 GO:0005515
Tsu01g00349 465 SMART WD40_4 205 244 IPR001680 GO:0005515
Tsu01g00349 465 SMART WD40_4 95 132 IPR001680 GO:0005515
Tsu01g00349 465 SMART WD40_4 294 333 IPR001680 GO:0005515
Tsu01g00349 465 SMART WD40_4 337 374 IPR001680 GO:0005515
Tsu01g00349 465 SMART WD40_4 247 285 IPR001680 GO:0005515
Tsu01g00349 465 SMART WD40_4 133 170 IPR001680 GO:0005515
Tsu01g00349 465 Gene3D - 73 194 IPR015943 GO:0005515
Tsu01g00349 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 333 IPR001680 GO:0005515
Tsu01g00349 465 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 454 IPR045182 -
Tsu01g00349 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 284 IPR001680 GO:0005515
Tsu01g00349 465 Gene3D - 195 292 IPR015943 GO:0005515
Tsu01g00349 465 SUPERFAMILY WD40 repeat-like 100 435 IPR036322 GO:0005515
Tsu01g00349 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 253 IPR001680 GO:0005515
Tsu01g00349 465 Gene3D - 293 463 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00349 Tsu-Chr1 2919118 2921838 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00349 01 2919118 2921838 Tsu01g00349 01 2919118 2921838 ECH