Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00346 ATGGCGAAATCCAGCGCCGACGATGTTGAACTCCGGCGAGCTTGCGAAGCTGCAATTGAAGATCCTAAGCAGAAGATCATCTTATCACTTCGTGTTTCCAAGAGTCACGGGATCTTAGGAAAATCTTCTAAGCTTGGTCGTCAAATGGCCAAGCCTAGGGTTCTTGCTCTATCCACACTAACAAAGGGTCAGACGACTACAGCTTTTCTTCGAGTTATGAAGTATTCTACGGGAGGAGTTCTTgaaCCTGCAAAACTATACAAGCTAAAACATCTCTCAAAAGTAGAAGTTTTAACAAACGATCCCAGTGGATGTACATTTACACTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCGCAATGGTCAATGCGCAATATTGATGACAGGAATCGTCTCCTTCTTTGTATCTTGACCATCTGTAAAGATGTTTTGGGTCGCCTTCCTAAGGTCGTTGGCATAGATGTTGTGGAGTTGGCTCTCTGGGCTAAGGAAAATAGAGCTCCTGTTTCTACTCAGAGTAATGTGCAAGATGGTGGTCCTGTTGCTTCCGCAATGACCGAGAGAGAGTTGAAAGTCAATGTTGAAAAAGACCTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCCCTTTTAGGAACTTATGTCATAGGTGTAGGTGAAGCAGAAGAATTTTCTGAAAGACTGAAGAGAGAGCTCCAGGCTCTGGAAGCAGCTAATGTACACGCCATTTTAGAAAGTGAGCCTTTGATAAATGAGGTGTTGTATGGGCTTGAAGCAGCAACAAGTTGTGTAGAAGATATGGATGAATGGTTAGGCACATTCAATGTTAAACTCCGGCACATGAGGGAGGATATTGCATCGATAGAAACCCGTAATAACAGTTTGCAAATGCAATCGGTAAATAACAAATCTCTCATTGAGGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCAACGTGTTTGACAGGAGGTTCATTTGATGAAGATCGGATGCTTCAAAATGTAGAAGCATGTGAGTGGCTGACTAGTGCCTTGCGTGGTCTTGAAGTGCCCAATATTGACCCTACTTATGCAAGCATGAGAGCTGTTAAAGAGAAGCGTGCGGaacttgaaaaattaaaatccacTTTTGTCAGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGCGAGGACAGTTGAAAAGGCCTGATCATGCTGACCTCCGGTACAAGTGCAGGACATATGCACGTCTTCTTCAACATTTGAAGAGTCTTGACAAGAATTGCTTGGGTCCACTAAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGTCGGGAGGCTCGGGAGTTTGCAAACGAACTCCGTGCTAGTACAAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGTTCAACTGGCTCTGGTCAGAATGTAAATGCTACTGATACTTCTACAGTCTCTGATGCTTATGCAAAGATGCTCACAATTTTTATCCCACTTCTGGTTGATGAGAGTTCATTTTTTGCACACTTCATGTGCTTTGAAGTTCCCACACTTGTTCCTCCAGGAGGTATTGTTAACGGCAATAAAGCTGGttacgatgatgatgatgatttgggaaTTATGGACATTGATGAGAATGACGGTAAATCTGGAAAAAATTCTGATGAGCTTGCAGCTTTAAATGAATCGCTTCAGGATTTACTCGACGGAATTCAAGAGGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTACGCTGCATATCAATGCATGGAATAACAGAACGCTATCTTTCTGGTCAAAAAGCTGATGCAGCAGGATTTGTACGTCTTTTGCTTGGCGACCTAGAGTCCCGGATATCTATGCAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATcaaattgaaagaaatgaaCGCAATGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGGTTTGCAACCCTTGCAACTCGTATGGAGCAGTACATTCAGGGACAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTTAGCGTAATGTTTGCAACCTTGGAAAAAATATCACAAACAGATCCAAAGTATGCagacatttttctttttgagaaCTATGCCGCCTTTCAGAATAGTTTGTATGACCTAGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACACGCCATATTAGCATGATTATATACTTTCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACAGTTGCACCCGAAGAGATACCTTTCCAGCTTGGGCTGTCAAAAATGGATCTTCGGAAAATGCTAAAGTCCAGCTTATCTGGGATTGACAAGTCTATTAATGCGATGTATAAGAAACTACAGAAGAATTTGACTTCAGAAGAACTGTTACCTTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGACAAGTACGAAAGTTTTGCCCAACTTGTGGCCAAGATTTACCCTAATGAGACAATCCTATCTGTTGCAGAGATTAAAGAACAGTTAGCTAACATGTAA 2652 0.4133 MAKSSADDVELRRACEAAIEDPKQKIILSLRVSKSHGILGKSSKLGRQMAKPRVLALSTLTKGQTTTAFLRVMKYSTGGVLEPAKLYKLKHLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWSMRNIDDRNRLLLCILTICKDVLGRLPKVVGIDVVELALWAKENRAPVSTQSNVQDGGPVASAMTERELKVNVEKDLVSQAEEEDMEALLGTYVIGVGEAEEFSERLKRELQALEAANVHAILESEPLINEVLYGLEAATSCVEDMDEWLGTFNVKLRHMREDIASIETRNNSLQMQSVNNKSLIEELDKLLERLRVPSEYATCLTGGSFDEDRMLQNVEACEWLTSALRGLEVPNIDPTYASMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGIVNGNKAGYDDDDDLGIMDIDENDGKSGKNSDELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKISQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYFQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGIDKSINAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNETILSVAEIKEQLANM 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00346 883 Coils Coil 221 248 - -
Tsu01g00346 883 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Tsu01g00346 883 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Tsu01g00346 883 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
Tsu01g00346 883 Pfam Exocyst complex component Sec3 574 867 IPR019160 GO:0000145|GO:0006887
Tsu01g00346 883 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 883 - -
Tsu01g00346 883 Coils Coil 281 318 - -
Tsu01g00346 883 PANTHER SEC3/SYNTAXIN-RELATED 1 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00346 Tsu-Chr1 2871460 2887136 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00346 01 2871460 2887136 Tsu01g00346 01 2871460 2887136 ECH
Tsu01g00346 01 2871460 2887136 Tsu07g00361 07 2706663 2727119 PCT