Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00341 ATGGGTTGGCTTAGTAGAATTTTTAAAGGCTCTGACCATAACGTTTCAGAAGGGCATTACTATAAAGACGATTCCAATTATTACTTGCCGTCAACTTCAGGGGATGTTTGGGCTGAGAATGAGAATGAAGATATCGATCGTGCTATTGCATTGTCTCTAGCGGAAGACACTCCTAAAGCGAAAAAAGTTAAAGACCACAAATCACAGttagaagaagatgaacaacTTGCCAGAGCTATAGAAGAAAGCCTGAATTTGGAGTCACCTCCCAAACATggaaatgataataataataatatgtatcAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGGGTGCATTTTGGCATCCTGAATGCTTCCGCTGTCGTGCTTGCAACCTACCAATCTCTGATTACGAGTTTTCCACATCCGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCCAAATGTGATGTCTGCAGACACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAGCATGATAATACTCCTCGCTGTTGTAGCTGTGAGCGAATGGAGCCAGAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTTGATTCTTCTATCATGGATACTAACGAATGCCAACCCCTTCATGCTGATATACTGAAGTTCTATGAAAGCATAAATATGAGACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGACAAGCACTGAACGAAGCAAGGGAGGGAGAGAAAAATGGCCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCCGAGGAACTCAGCACAATTTCAAGACGACCTTACAAAGGCATGAGATCACAACCGTACAAAGTGACTGCTCGCTGTGATGTTACAGCAATTCTCATTCTATATGGTCTTCCAAGGTag 1032 0.4157 MGWLSRIFKGSDHNVSEGHYYKDDSNYYLPSTSGDVWAENENEDIDRAIALSLAEDTPKAKKVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNNNNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCRHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPEGTGYIALKDGRKLCLECLDSSIMDTNECQPLHADILKFYESINMRLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPYKGMRSQPYKVTARCDVTAILILYGLPR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00341 343 Gene3D Cysteine Rich Protein 109 173 - -
Tsu01g00341 343 PANTHER PROTEIN DA1-LIKE 1 343 - -
Tsu01g00341 343 CDD LIM_DA1 114 166 - -
Tsu01g00341 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 202 - -
Tsu01g00341 343 SMART lim_4 113 165 IPR001781 -
Tsu01g00341 343 SMART uim 71 90 IPR003903 -
Tsu01g00341 343 SMART uim 40 59 IPR003903 -
Tsu01g00341 343 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Tsu01g00341 343 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
Tsu01g00341 343 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Tsu01g00341 343 Coils Coil 63 83 - -
Tsu01g00341 343 ProSiteProfiles LIM domain profile. 112 172 IPR001781 -
Tsu01g00341 343 Pfam LIM domain 114 168 IPR001781 -
Tsu01g00341 343 ProSitePatterns LIM zinc-binding domain signature. 114 148 IPR001781 -
Tsu01g00341 343 Pfam Protein DA1 264 343 IPR022087 -
Tsu01g00341 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 139 - -
Tsu01g00341 343 PANTHER PROTEIN DA1-RELATED 2 1 343 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00341 Tsu-Chr1 2797938 2802066 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g00341 DA1-like 4.3e-28 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00341 01 2797938 2802066 Tsu01g00341 01 2797938 2802066 ECH