Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00335 ATGGACTTCGTTTTTCTTCGCTTTAGTTCATGCATGCCGTTCAGATTTCGTTCTAAGCTTTCACTCGCCATCGTCGTTTTCCAGATTGTATTGATATTGGCATGGTTGGAAGCATATAATGTAACAGCCCAAGAACAACAATTTCAATGGGGAGGATTGGAAGAGAAGGTTGAGAAAATTGACTCACACTCTTGCATACATGACCAGATACTTGAACAGAGAAAGCGACCTGGTCATAAGGTGTATTCAGTTACCCCACAAGTTTACGAGCCTGGTAGATCGAAGCCCCTTCAGCATAAAGGTAGGGCATTGCTTGGTATATCGACATCATCAAAGCCCGAAAAGGATGAAAAACAACCTATTAGGATATATCTAAATTATGATGCTGTTGATCACTCCCCTGACAGGGATTGTAAAAAAGTTGGTGACATTGTTAAGCTTGGGGATCCCCCGATTACTTCTCTTCCTGGTTTGCCGCCTTGTAATCCTCTTTCTAATCATCCAACCCTCGGTGGTTGTTGGTATAACTGCACTTCTGAAGATATATCGAGAGATGATAAAAAGCACCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGGCTGTTGAGCCTGTCAAGGGGAATTTGCGATTGAGTGGATATTCTGCATGTGGACAAGATGGAGGTGTGCAGCTTCCTCGGGAATATGTTGAAGAGGGAGTCTCTGATGCTGACTTAGTTCTTTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCAGTGGCATGTGAACGAGATCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCGGAGACTTTGCTTTCAGCTACTCTGATACATGAGGTTATGCATGTTCTTGGTTTCGACCCTCATGCCTTTGTTCATTTTAGAGACGAAAGGAAAAGACGTCGTAATAAGGTTACTGAACAAGTTATGGATGAAAAGATTGGGCGAACAGTAACACGTGTGGTGCTTCCACGTGTTGTCATGCATTCACGACATCATTATGCGGCGTTCTCAGGAAATTTTACTGGTTTGGAGCTGGAAGATGGTGGAGGACGTGGCACATCAgGGTCTCATTGGGAAAAAAGGCTTCTGATGAATGAGATCATGACCGGTTCGGTGGATACAAGATCCGTAGTTTCAAACATGACACTAGCTCTCTTAGAAGATAGCGGGTGGTACAAAGCCAATTATAGCATGGCAGACAGACTTGATTGGGGTCGCAACCAAGGTACTGAGTTTGTTACTTCCCCTTGCAATCTCTGGAAGGGAGCCTATCATTGCAAAACCACACAGTATTCAGGTTGTACATATAACAGAGAGGCAGAGGGTTACTGTCCCATTGTAACTTATAGCGGAGAGCTTCCTCAGTGGGCTCGATATTTTCCACAAGCTAATAAAGGTGGACAATCTGCATTAGCTGATTATTGCGCTTATTTTATTGCATACTCTGATGGATCATGTACAGACACCTCCAGTGCACGTGCACCTGATAGAATGCTAGGCGAAGTCCGAGGAAGTAACTCTAGGTGTATGGCATCATCATTAGTGCGCACAGGATTCGTACGAGGTTCTCCAACCAATGGAAATGGTTGTTATCAGCACAGGTGTATCAACAACACTTTAGAGGTTGCCGTGGATGGTATGTGGAGACAGTGTCCTCAGGCTGGCGGGTCCATTCATTTTCCCGGCTTTAATGGTGAATTGATCTGCCCTGCATATCATGAGCTCTGTAACACAGACACGGTGGTTGACTCAGGGAAATGTCCCAGTGCATGTAATTTTAATGGAGATTGTGTTGATGGAAGGTGCCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTAGACGTTCCTGCCCCAGAAATTGCACTGGTAATGGCTTGTGTCTCAACAATGGAATATGTGAATGTAAACCTGGTTACACTGGCATTGACTGTTCCACTGCTATCTGTGATGAGCAATGCAGCCTTCATGGCGGGGTTTGTGATAATGGAGTTTGCGAATTCCGCTGTTCTGATTATGGGGCATACAGTTGCCAGAACAGCTCCGTGCTCCTCTCAACTCTGTCAGTTTGCAAAAATGTGCTAGGAAGTGATATTTCTGGGCAACATTGTGCACCCAGAGAACCTAGCATACTGCAGCAGCTAGAAGAAGTGGTTGTCATGCCCAACTACAACCATTTATTCCCAGTTGGCGCTAggaaattatttaatatatttggtaGCACCTACTGTGATGAGGCAGCTAAACGGCTTGCTTGCTGGATCTCAATTCAGAAGTGTGACAAGGATGGAGACAACAGGCTACTAGTATGTCATTCTGCGTGTGAGTCTTACAATCTTGCGTGTGGAGTTTCACTGGACTGCAGTGAACAAACCCTTTTCAGCAGCAAGGAGGAGGGTGAGGGTAAATGTACTGGTTTTGGTGAGATGAAATTGTCATGGTTTAATCGATTGAGAAGAAGTTTTCTTTGCGAAATAGTTCCTCAAAAGAAATGCTTGTAA 2568 0.4447 MDFVFLRFSSCMPFRFRSKLSLAIVVFQIVLILAWLEAYNVTAQEQQFQWGGLEEKVEKIDSHSCIHDQILEQRKRPGHKVYSVTPQVYEPGRSKPLQHKGRALLGISTSSKPEKDEKQPIRIYLNYDAVDHSPDRDCKKVGDIVKLGDPPITSLPGLPPCNPLSNHPTLGGCWYNCTSEDISRDDKKHRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFVHFRDERKRRRNKVTEQVMDEKIGRTVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSNMTLALLEDSGWYKANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCKTTQYSGCTYNREAEGYCPIVTYSGELPQWARYFPQANKGGQSALADYCAYFIAYSDGSCTDTSSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSPTNGNGCYQHRCINNTLEVAVDGMWRQCPQAGGSIHFPGFNGELICPAYHELCNTDTVVDSGKCPSACNFNGDCVDGRCHCFLGFHGHDCSRRSCPRNCTGNGLCLNNGICECKPGYTGIDCSTAICDEQCSLHGGVCDNGVCEFRCSDYGAYSCQNSSVLLSTLSVCKNVLGSDISGQHCAPREPSILQQLEEVVVMPNYNHLFPVGARKLFNIFGSTYCDEAAKRLACWISIQKCDKDGDNRLLVCHSACESYNLACGVSLDCSEQTLFSSKEEGEGKCTGFGEMKLSWFNRLRRSFLCEIVPQKKCL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00335 855 Gene3D Laminin 639 670 - -
Tsu01g00335 855 Gene3D Laminin 608 637 - -
Tsu01g00335 855 Gene3D Leishmanolysin domain 4 503 598 - -
Tsu01g00335 855 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 6 831 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Tsu01g00335 855 ProSiteProfiles EGF-like domain profile. 636 668 IPR000742 -
Tsu01g00335 855 SMART egf_5 639 668 IPR000742 -
Tsu01g00335 855 SMART egf_5 608 636 IPR000742 -
Tsu01g00335 855 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 116 602 - -
Tsu01g00335 855 SUPERFAMILY Frizzled cysteine-rich domain 742 811 IPR036790 GO:0005515
Tsu01g00335 855 Pfam EGF-like domain 640 667 IPR013111 -
Tsu01g00335 855 Gene3D - 114 304 - -
Tsu01g00335 855 Pfam Leishmanolysin 172 600 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Tsu01g00335 855 Gene3D Leishmanolysin domain 3 442 501 - -
Tsu01g00335 855 Gene3D Leishmanolysin , domain 2 314 439 - -
Tsu01g00335 855 ProSitePatterns EGF-like domain signature 2. 656 667 IPR000742 -
Tsu01g00335 855 PRINTS Leishmanolysin (M8) metalloprotease family signature 402 431 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Tsu01g00335 855 PRINTS Leishmanolysin (M8) metalloprotease family signature 249 278 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Tsu01g00335 855 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 6 831 - -
Tsu01g00335 855 ProSitePatterns EGF-like domain signature 1. 656 667 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00335 Tsu-Chr1 2745221 2752538 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00335 01 2745221 2752538 Tsu01g00335 01 2745221 2752538 ECH
Tsu01g00335 01 2745221 2752538 Tsu07g00357 07 2684950 2692461 PCT