Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00328 ATGAAATTAAAGTCTAAGAAAGGATGGAAATCTATTGTACCTCTTCATTTAAAAGGAAAATCACCAGCAACTCGTTTTTCTTTATTTCGCAAAGTCAATTCAGCTAGCCATGGACCTGGTAAAACACCAGTTTATCTTAATGTGTATGATTTGACCCCTATGAATGGCTATGTGTATTGGGCTGGTCTTGGTATCTATCACTCTGGTGTCGAAGTTCATGGTGTAGAGTATGCATTTGGGGCTCATGACTACCCAACAAGCGGTGTTTTTGAGGTCGAACCTCGGCAATGCCCAGGCTTCAAGTTCAGGAAGTCAATATTTGTCGGAACTACATCTTTGGATCCTGTTCAGGTCAGAGAATTCATGGAATGCGAGTGTGCAAACTACAATGGCGACACATATCACTTAATTGCTAAGAACTGCAATCACTTCTGCAAAGACATATGCTACAAGCTGACGGGGAAATCAATTCCAACTTGGGTAAATCGGCTTGCCAAGCTAGGTATGTTACTAATCCTGTTTCGTTCGGATATTAGTTGA 540 0.4111 MKLKSKKGWKSIVPLHLKGKSPATRFSLFRKVNSASHGPGKTPVYLNVYDLTPMNGYVYWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRKSIFVGTTSLDPVQVREFMECECANYNGDTYHLIAKNCNHFCKDICYKLTGKSIPTWVNRLAKLGMLLILFRSDIS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00328 179 ProSiteProfiles PPPDE domain profile. 42 171 IPR008580 GO:0008233
Tsu01g00328 179 SMART DUF862_2a 42 178 IPR008580 GO:0008233
Tsu01g00328 179 PANTHER DESI-LIKE PROTEIN 13 170 - -
Tsu01g00328 179 Pfam PPPDE putative peptidase domain 43 170 IPR008580 GO:0008233
Tsu01g00328 179 PANTHER DESUMOYLATING ISOPEPTIDASE 13 170 IPR008580 GO:0008233
Tsu01g00328 179 Gene3D PPPDE domains 38 176 IPR042266 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00328 Tsu-Chr1 2671017 2674088 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00328 01 2671017 2674088 Tsu01g00328 01 2671017 2674088 ECH