Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00316 ATGGCTCAAAACTCAACTTCCGATACTCGTCTCAACGCTAACTCTGCTTCTCCATTGCAGATCTCCAAAGATGTCCAAGGCTCTGACAATCCTATTCCACTTTCACCACAATGGCTTCTGTCAAAGCCAGGGGAGAATAAATCTGGAACAGGACCTATGGAAAACCATGTGATCTCAAATCCATCACATGGCAGTCGCTCAGAGACTGTTAAGATATCTGGTGATGGAGAGGATGCACAGAAGAGAAAGGATGTCTTTAGGCCATCCATGTTTGACTCTGAAAGTGGACGTCGTGATCGTTGGCGTGATGAAGAGAGAGACACTGAGAGAGACACCAAGTCCTCCATACGTAAGGATCGTTGGAGGGATGGGGACAAAGACCTGGGTGATTCTCGGAAGGTGGATCGATGGGGGGAAAATTCAGCTCCAAAAAACTTAGGAGAAGCACGTCGTGTTACATCTGATAGTCATAGATGGAATGATTCAGGAAACCGGGATGCTAACTTTGATCAGCGGCGTGAGAGCAAGTGGAACTCACGCTGGGGTCCTAATGATAAGGATCCAGAAGGTCTTCGTGAAAAATGGAGTGATTCAGGAAAAGATGGTGATATACATCTGGATAAAGGTTTGTCTCATGGGAAGGATGAGAAGGACGGAGATCACATTCGACCATGGAGACCTAACTTTGCACAAAATCGTGGAAGGGTAGAGCCTCCTCATTCCCAAAGCACACCGCCACACAAACAAGGTTCTACATTTTCCTATGGTCGTGGCCGTGCGGAGAATACACCTCCACCGGTCTTCAGTCCTGGACACGGCCGTGGTGGCTCTGGTGGTAGCTCTTTCAATAGCACATATCCTGGAACTGCATTAGACAAAGTAGAGAGTGGACATGAAGAATCTTGCCCCTTCAAATATAACAGGACAAGATTGCTTGATGTGTACAGAGTTACTAATATGGGTAGAAATAGAAAGCTTGTTGATGATTTCGTGCAGGTTCCGAGTCTTACACAGGATGAACCGTTGGAGCCTCTTGCTCTTATGACACCAAGTTCCGAGGAACTGTCTGTCTTAAATGGTATTGACAAAGGAGAGATAATTAGTAGTAGTGCACCTCAAGTGACCAAAGAAGGAAGGGGCTCAACAGATTTTACTCATACTAGACGTATGAAGCCTGGAACCACTCCTCTCCAAGATAGAGGTGAAGATGGAGGTTCTTACAAAGTTGCCGATGAGTTATCCAGTAATAGAGATTCCTCCTTTGAAGGAAATAGTTCTCTTCATTCTGGTGCTGCATGGCGAGCCAATAGCAGAGATGAACATACAGGCACTCTCTTGCACAATAGCAGAGATGTACCTAGTGATGTTAGACTAAGGAAATCAGATGAGAGTTCACACCAGCCAAAAGATCCTCAAAGTCACTGGGAAAGCAAATTGGGTTTTGTATCTGAGTCCAAAGAAGTAGGTAAGTGGAGCGCTAGTGAAGATTCCATTGTTAAAAGGCAGCTATCTGGTGCTTTGGAAAGTGAACTTGGAACCAGAAGAGTTCCTCCGACTGCTCCAGAGGAGTTATCTCTTTTGTATAAAGATCCTAAGGGTCTAATCCAAGGCCCATTTAAAGGAATTGATATTATTGGATGGTTTGAGGCTGGATATTTTGGTATTGATTTACCTGTTCGTCTGGAAAATTCAGCAGCTGACTCGCCATGGTTTTCTCTTGGTGATGTCATGCCACATTTACGAGCTAAAGCCCGGCCACCACCGGGATTTTCTGCACCACAACCTGAATTGGCAGATATAACTGGCCGCCAAAATCCTGCTACATTTGGAAATGCTGTCACTGGCTTGAGTGAGGTTGAGATGTTGAAAAGTGATTCTAGACATCGGCAGGGTCCTGATACTGGAGTTGAAAATAGGTATCTGGAGTCCCTCATGTCTGGTAACAGGAGCAGTCCTACAATTAATAACCTGGCATTATCAGAAGGTTTTCAAGGGTTTGCTGGAAATAATTCTGGCAATCTGGGCCCATCGGGAATAGATAGTGGAAACAACATTTACTTGCTTGCTAAGAGGATGGAACTTGAACGCCAGATGTCCTTACCCAATTCATATCCATATTGGCCAGGGCAGGATGCAGCATCCCTCGCTCCAAAATCAGATGTCCCAGATCTGCATTCAAAGCTCCTGTCTTCAGTGAGCGACAATTCGCGTCAACCTCAGTCCCAAAGCTCTGAGTGGTTGTCGATAATCCAAGGATTATCTGACAGGACATCTGCAGGCATGAATAATGGCACTGCTGGATGGCCAAATAATCCTTTACAAGGTGGAATGGATCTCCTTCAGAATAAAATTGACCCACGACATGATCAGAATTTCACCCAAATGCCATTTGGAATTCAACAACAAAGGCCGACACCACAAAATCAGTTGTCTTTAAGTAATTTATTGGCTCAAGCTGCGGATAGCCCAGCCAGTTCTTTGACAGCAGAGAAGCTACTATCTCCCGGTTTATCACAAGATCCACAAATATTGAATCTGTTGCAACAGCAATACTTGTTGCAGTTGCATTCTCAAGCAGCTGCTTCAGCACCACAGCTGCCCCTGTTAGATAAACTCCTGTTGctgaagcagcagcagaagCAGGAGGAGCAGCAGCTGCTCTTGCggcaacaacagcaacaactgCTTTCCAAAATGTTGCAGGACCAACAGTCTAGCCAGCTTTTTGGCAATTCATCATATGGACAGTTGCAAAGTGTACCAATGGGAAATTTGCGTGTGGATCCTTCTCAACTTCAACCCCCACAAGAGATTTTTCCCATGAGCTCCCAGATACCAATTCCTAGTGTACACAATGACCTTAATACCGACTCTATGAATTTGCATCTTAAAGTCAGCCAAGACACAAGTTATACAGTTAACAGTAAAGCTTCTACTATGCGTCTGCCTCACCAGTTATTTGGAGATACTGTTCCTCAGAATAACTGGGCTCCTACTCTTGCTGAGCAAATTAATGagaataataaaaaggaaattgcAGCTCCTCATGTTGAGAGTTCACTTGTGCCTGACCTGAACAGATCCAAAGAGGAACCCCACATTGTGCAGGATTCTGTTTTTGACTACACTGCTAAGTCATTGGAGCAGCTTCAGGACAGCGCCTTGAAACCTGACAATGGTGCGAGACAAGCAATTTATACGCCTTCTATACATTTACAGAGTGATGCACCTGCTGTTGATAAATCTTCAGTAGGATCTAATGAGGTTGAGTTACCCCCCGCAAGTCGTGGTTCAGATGTGAAGATCAAATCAGATATTGCACATCAAGAGCAGCTGGCTGGAATAGACAACTCCAATGCTGTGCATGTTGAAACACATGAACCCAAAAAGGCTACTGAGAAGAAATCTAAGAAGCAAAAATCTAGCAAACAATCTTCTGACCAATCAAAGGGATTGCTAAAAAACACGACTTTGCAGCCATCAAAGCAGTCAGAAGTTGAAATCCCAATTTTTAATGAGTTGGGGGGAACAAACAAAGATGAACCACATGAAACATATCTGCAGAAAACAAGAAGTAAGGCAAGTCAAATGGAAGAAACTGATGCCGTTGAGACAGCTGAATATCACAATGCCGAAGTTCCTGCTGGACGAGCTTGGAAACCCGCTCCAAGTGTCAAGGCAAAGTCTTTATTAGAAATTCAACAGGAAGAACAGAGAAAGGCACAGACAGAAACACTTGTATCTGATGTTACTGCTTCTGTCAATTCCTTGAGTCTGGCAACGCCTTGGGCTGGGGTTGTGTCGTATCCAGATTCTGTTAAGGTATCTAGTGAAAGTCGCGGAGGAGCCAATACAGAAACAACTGTTAATTCTcaaatttctcaaaatctgAAGAGCAAGAAAAGTCCGCTGCATGATCTATTAGCTGAAGAAGTTTTGAAGAAATCTAATGAAAAAGAAGTGGAGGTTCCAGATAGCACATTGGCTTCACATGATATTGCCGTGCAATCAGAATCAATAGATGGTAGTAACTTCATTGAGGCAAAAGATACTAAAAGAAGTCGCAAGAAGTCAGGAAAATCAAAGGGTTCTGGAGTTAAAGCCCCAGTTCCAGTTACGTCTGCTGAAGTGCCTATGTCTTCAAGCCCAATTGAAAAAGGTAAAAGTTCCCGATCTGCACTACAGGAAAAAGAAGCATTGCCTTCAATCCCTTCAGGACCCTCTCTGGGAGACTTTGTTCTTTGGAAAGGAGAGCGAGAGCAACCTAACGCATCTCCTTCTCCTGCATGGTCTACTGATTCTGGTAGGGTTCCTAAACCGACTTCTTTAAGGGACATTCTGAAGGAGCAGGAGAAAAAAGCTTCTTCTGCAGTTCCTGCGAGCCCAGTGCCTACGCCTCAGAAATCCCAGCCTGCCCAAGCTAATTGGAGTAGTACTTCTTCACGGTCAATTTCAGCTTCCTCTCCATCTAAAGCCGCCTCTCCACTTCCAATAAACTCACATGCTTCTAATCAATCGAAATATAAAGGGGATGATGACTTGTTCTGGGGTCCAATTGAGCCATCTAAGCAAGAAACTAAGCAATCAGAATTCCCTCAGCTGGCTAGCCAGGGAAGCTGGGGATCCAAAAATGTACCCTTGAAAGGTAACTCATCGGGATTATTAGCCCGACAGAAATCAGCAAGTGGCAAATCAACTGAGCGACCTCTGTCATCATCACCTGCCTCTTCTCAATCGGCGCTGAAACTGAAAAATGATGCTATGACCAAGCATTCTGAGGCCATGGGCTTCAGAGATTGGTGTGAGAATGAGTGTGTCAGGCTTATTGGGACAAAAGGTACTTGTACCATTACAGTTTTTGGTTGctattaa 4872 0.438 MAQNSTSDTRLNANSASPLQISKDVQGSDNPIPLSPQWLLSKPGENKSGTGPMENHVISNPSHGSRSETVKISGDGEDAQKRKDVFRPSMFDSESGRRDRWRDEERDTERDTKSSIRKDRWRDGDKDLGDSRKVDRWGENSAPKNLGEARRVTSDSHRWNDSGNRDANFDQRRESKWNSRWGPNDKDPEGLREKWSDSGKDGDIHLDKGLSHGKDEKDGDHIRPWRPNFAQNRGRVEPPHSQSTPPHKQGSTFSYGRGRAENTPPPVFSPGHGRGGSGGSSFNSTYPGTALDKVESGHEESCPFKYNRTRLLDVYRVTNMGRNRKLVDDFVQVPSLTQDEPLEPLALMTPSSEELSVLNGIDKGEIISSSAPQVTKEGRGSTDFTHTRRMKPGTTPLQDRGEDGGSYKVADELSSNRDSSFEGNSSLHSGAAWRANSRDEHTGTLLHNSRDVPSDVRLRKSDESSHQPKDPQSHWESKLGFVSESKEVGKWSASEDSIVKRQLSGALESELGTRRVPPTAPEELSLLYKDPKGLIQGPFKGIDIIGWFEAGYFGIDLPVRLENSAADSPWFSLGDVMPHLRAKARPPPGFSAPQPELADITGRQNPATFGNAVTGLSEVEMLKSDSRHRQGPDTGVENRYLESLMSGNRSSPTINNLALSEGFQGFAGNNSGNLGPSGIDSGNNIYLLAKRMELERQMSLPNSYPYWPGQDAASLAPKSDVPDLHSKLLSSVSDNSRQPQSQSSEWLSIIQGLSDRTSAGMNNGTAGWPNNPLQGGMDLLQNKIDPRHDQNFTQMPFGIQQQRPTPQNQLSLSNLLAQAADSPASSLTAEKLLSPGLSQDPQILNLLQQQYLLQLHSQAAASAPQLPLLDKLLLLKQQQKQEEQQLLLRQQQQQLLSKMLQDQQSSQLFGNSSYGQLQSVPMGNLRVDPSQLQPPQEIFPMSSQIPIPSVHNDLNTDSMNLHLKVSQDTSYTVNSKASTMRLPHQLFGDTVPQNNWAPTLAEQINENNKKEIAAPHVESSLVPDLNRSKEEPHIVQDSVFDYTAKSLEQLQDSALKPDNGARQAIYTPSIHLQSDAPAVDKSSVGSNEVELPPASRGSDVKIKSDIAHQEQLAGIDNSNAVHVETHEPKKATEKKSKKQKSSKQSSDQSKGLLKNTTLQPSKQSEVEIPIFNELGGTNKDEPHETYLQKTRSKASQMEETDAVETAEYHNAEVPAGRAWKPAPSVKAKSLLEIQQEEQRKAQTETLVSDVTASVNSLSLATPWAGVVSYPDSVKVSSESRGGANTETTVNSQISQNLKSKKSPLHDLLAEEVLKKSNEKEVEVPDSTLASHDIAVQSESIDGSNFIEAKDTKRSRKKSGKSKGSGVKAPVPVTSAEVPMSSSPIEKGKSSRSALQEKEALPSIPSGPSLGDFVLWKGEREQPNASPSPAWSTDSGRVPKPTSLRDILKEQEKKASSAVPASPVPTPQKSQPAQANWSSTSSRSISASSPSKAASPLPINSHASNQSKYKGDDDLFWGPIEPSKQETKQSEFPQLASQGSWGSKNVPLKGNSSGLLARQKSASGKSTERPLSSSPASSQSALKLKNDAMTKHSEAMGFRDWCENECVRLIGTKGTCTITVFGCY 1623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1272 1582 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1424 1438 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1 298 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1074 1209 - -
Tsu01g00316 1623 CDD GYF 523 580 IPR003169 GO:0005515
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 412 432 - -
Tsu01g00316 1623 SUPERFAMILY GYF domain 516 580 IPR035445 -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1177 1206 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1122 1144 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 440 473 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1460 1505 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1330 1344 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1375 1389 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 235 258 - -
Tsu01g00316 1623 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1614 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 70 139 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g00316 1623 Pfam GYF domain 528 570 IPR003169 GO:0005515
Tsu01g00316 1623 ProSiteProfiles GYF domain profile. 523 574 IPR003169 GO:0005515
Tsu01g00316 1623 Coils Coil 874 894 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 368 476 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 150 224 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1145 1166 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1303 1326 - -
Tsu01g00316 1623 Gene3D - 511 590 IPR035445 -
Tsu01g00316 1623 SMART gyf_5 524 579 IPR003169 GO:0005515
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 276 290 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 52 69 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1522 1582 - -
Tsu01g00316 1623 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1614 - -
Tsu01g00316 1623 MobiDBLite consensus disorder prediction 1272 1301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00316 Tsu-Chr1 2577731 2587607 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00316 01 2577731 2587607 Tsu01g00316 01 2577731 2587607 ECH
Tsu01g00316 01 2577731 2587607 Tsu07g00345 07 2597416 2606005 PCT