Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00309 ATGCCGTTCTCTTCAGTCTCTACTCGTCTCACACTCCTCGCTCTCTTCTCCGCCACAACCTTCTATTGCATCTATAAATCCCGCCGTTTAAGAAACCTCAAACTAACACTCTCTTTAAACCCTAATCCAAACCCTAACACTAAACTTAATCTCCCTAAGATCCTCTTCATTTCCGAAACCGGAACTTCCAAATCCCTCGCTAACCGTCTCCACCGTTTCCTCTCCTTAAACGACGTTGCATTTGAAATCATCGATGGTAGAAGCTACGAACCAGAAGATCTTCCCAAGGAAACGCTCCTTCTCATTGTTGCTTCGACTTGGGAAGACGGAAAACCACCATCTGCTTATAGATTTTTTGCTGATTGGCTTGCGGAGAGTTCTGAAGATTTTAGAGTTGGTTCGTTGTTGCTTTCCAAGTGTAGGTTTGCAGTATTCGGTGTCGGTAGTCGAGGTTATGGTGATAGTTTTAATGCGGTTGGTAAGGAGATTGTTAAACGGATGAAGGCATTGGGTGGTGCTGAGATGGTTCCTTTGTGGGAAGGGGATGTTGATGGTGGTGATGTGGATGAGGCTTTTGATAAGTGGTGTGTGAAGGTTGTTGAATTGTTGAAAGGCGGTGTTGATGGTGGTGAGTTGGAGAATGGGGAGGAGGAATGTGGTGTTTTGAGTTCTGATGAAGAGGAGTCTGATgaagaggaggaggaagagGTGGAATCGGATATTGTTGATCTTGAAGACATTGCCGGTAAAGCTCCTTCGAGGAAGTCTGTGGCTACGGTGGAGCAGACTAATGGGAAGTTGAATGGTGGCAAGAAAGAAATGGTGACTCCTGTCATTAGAGCAAATTTGGTGAAGCAGGGGTATAAAATTATTGGTTCACATAGTGGTGTCAAGATTTGTAGATGGACTAAGTCACAGCTTCGAGGTCGAGGTGGTTGTTACAAGCATTCATTTTATGGAATCGAGAGTCATAGGTGCATGGAGGCAACCCCCAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGCAAAAAGTTGGCAGTGGAAGATGGACGATCCATTAGAGATAGTAAATTCTGCAATAGAGCAGCATACAAATATGATTAAACAAATGAAAGGAGTTCCCGGAGTCACCTTGGAGCGATTAAATGAAGGATTCACACCACGGCATTGTGCACTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTAGTGGATGAATTGCACAGAAGGAGGATTTCTACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCGCTGAAGCCAATCACTCAGTTATATGTCAGTGTTGATGCCGGAACAAAGGACTCTCTAAAGGCAATTGATAGACCACTCTTTGGAGATTTTTGGGAAAGATTTATTGATTCCTTGACTGCTCTGAAGGAAAAACATCAGCGTACTGTATACCGTCTGACCCTTGTAAAAGGCTGGAATGCTGAAGAGGTCGATGCTTATTATAATCTCTTTAGTATAGGAGAACCTGACTTTATTGAAATCAAGGGAGTAACATATTGTGGCTCGTAa 1590 0.4245 MPFSSVSTRLTLLALFSATTFYCIYKSRRLRNLKLTLSLNPNPNPNTKLNLPKILFISETGTSKSLANRLHRFLSLNDVAFEIIDGRSYEPEDLPKETLLLIVASTWEDGKPPSAYRFFADWLAESSEDFRVGSLLLSKCRFAVFGVGSRGYGDSFNAVGKEIVKRMKALGGAEMVPLWEGDVDGGDVDEAFDKWCVKVVELLKGGVDGGELENGEEECGVLSSDEEESDEEEEEEVESDIVDLEDIAGKAPSRKSVATVEQTNGKLNGGKKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWQWKMDDPLEIVNSAIEQHTNMIKQMKGVPGVTLERLNEGFTPRHCALSLVGEPIMYPEINALVDELHRRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNAEEVDAYYNLFSIGEPDFIEIKGVTYCGS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00309 529 ProSiteProfiles Radical SAM core domain profile. 319 529 IPR007197 GO:0003824|GO:0051536
Tsu01g00309 529 MobiDBLite consensus disorder prediction 209 240 - -
Tsu01g00309 529 SFLD tRNA wybutosine-synthesizing 271 529 - -
Tsu01g00309 529 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 529 IPR034556 GO:0008033|GO:0051539
Tsu01g00309 529 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 529 - -
Tsu01g00309 529 CDD Radical_SAM 331 524 - -
Tsu01g00309 529 Pfam Flavodoxin 54 195 IPR008254 GO:0010181
Tsu01g00309 529 PRINTS Flavodoxin signature 53 66 IPR001094 GO:0010181
Tsu01g00309 529 PRINTS Flavodoxin signature 139 149 IPR001094 GO:0010181
Tsu01g00309 529 PRINTS Flavodoxin signature 101 112 IPR001094 GO:0010181
Tsu01g00309 529 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181
Tsu01g00309 529 Gene3D Aldolase class I 257 529 IPR013785 -
Tsu01g00309 529 Gene3D - 43 211 IPR029039 -
Tsu01g00309 529 Pfam Radical SAM superfamily 331 510 IPR007197 GO:0003824|GO:0051536
Tsu01g00309 529 SUPERFAMILY Flavoproteins 54 203 IPR029039 -
Tsu01g00309 529 ProSiteProfiles Flavodoxin-like domain profile. 52 200 IPR008254 GO:0010181
Tsu01g00309 529 SUPERFAMILY Radical SAM enzymes 332 511 - -
Tsu01g00309 529 SFLD tRNA wybutosine-synthesizing 271 529 IPR034556 GO:0008033|GO:0051539
Tsu01g00309 529 MobiDBLite consensus disorder prediction 212 240 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00309 01 2520763 2524823 Tsu01g00309 01 2520763 2524823 ECH