Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00303 atgaaaatgaagagtGGAATAACTGTGAGTGTTGTTATGATGGTGTTGTTTTTGTTAGTTGAGTTAACAATGAGTTTGAGTTCAAGAGATGAATGGTTAGCGTTATTGGAGCTTCGTTCGTCGTTGGGGATAAGGGGAAAAGATTGGCATAAAAAAGTTGAACCATGTCGGAACTGGACTGGTATTAAATGCAGGAACGACCAAGTTGTTGGTATCAGCGTGTCCGGGTTGAAGAGAACCCGGTTGGGCCGTCTGAACCCAAGTTTTGAAGTGGATTCTCTTCAAAACTTCACTCTATTGGAGTCTTTCAATGCTTCTGGGTTCATGCTTAATGGGTCTATTCCTGACTGGTTTGGTGAGGAACTTGGTACACTACAAGAGCTTGATTTAAGGTCTTGTTCAATATCTGGTGTGATTCCTGATTCACTTGGGGGTATGAGAAGTTTGAAGCTTTTATTTCTTTCGGGGAATAATCTTACTAGTAGAGTGccttcaagtttggggttgttaTCTAATCTTTCTATTCTTGATCTCTCTGGAAATATGTTTTCAGGATCAGTGCCTGACAATTTCTCTAATCTTGGTAACCTTACAAGGCTTGATCTTTCTAATAATTACTTGTCTGGGTCTATTCCACCTGAATTAGGTAGCCTTTCAAATCTTCTAAATTTGAACCTTTCTGATAATGCTTTCACTGGTTCTGTTCCCTCTCAGCTAGGTAACCTTTCAAAGTTGGCTGAGCTTGATCTTAGTATGAATTCTTTTTCTGGATTTTTACCTGGTAATTTGTGGTCAATGCCTAGTTTGCAGTTTTTTGATGTATCAGGCAACAGTCTCACTGGTCGACTGCCGAAATTGTCTGGTTTAAATGTTAGCACAAATGGTGGCACATTCAATCTATCAAACAATTTGTTTTATGGATCTGTAAATGGTTCTACAATCAAGATTAAAATGATTGATTTATCCGGTAATTATTTGGATGGTGTTGTACAAAGTAGCGGCGGTGGTCTTAGTGATGTTACTCTAGCTAGAAATTGCCTACAGAAGATTCCAAACCAGAGGAGTTTCGAAGATTGTAGAATGTTTTATCAACAGAGAAATTTAACCTTTGCTCAAGGTGACCTTGAGTCCAAGAAAAGCAATAAAAGAGTGATATTCATACTGGCAGGTATATTTGGTGGGTTTGGATTTATTGTGCTACTGGTATTGGTACTCATATTGGTTCTGAAACAATGTCATAAAAGTAAAGATTTGGAAACTGAAAGAGGGACCACAAATCGGGGGCCGGTTACAGAAGGGGAAAGTCCTACACCTAAGGATCCTGTTTTTGTAACTGCCGTGGGTGAATCATTTACTTTTGAACAAATACTCCATTTTACTGGAAATTTTGATGAAGCAAACTTAATAAAGCAAGGTCATTCTGGAGACTTTTTCTGGGGAGTTTTGGAAAATGGAGCAACTGTGGTTATCAAAAGGGTAGATTTAAGTTCATTCAAGAAAGAATCTTACATTGTAGAATTGGAATTATTAAGCAAGGTTTCACATGCAAGATTGGTCCCAATTTTGGGACAATGCATGGACAATGAGAAGAATAAATGTATAGTTTACAAGTATATGATAAATGGAGATTTGGCTACTTCCTTACACAGAGTCAGTGGTTCAGATGGTAAAGTGCAGTCCATGGATTGGATCACAAGATTGAAAATTGCAGCAGGAGCTGCCGAAGGACTAGCTTACCTACATGATTGCAGCCCTCCTCTTGTTCACAGagATATCCGAGCTAGTAGTATACTTCTAGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTACATCACAAGGAGATTTTCATCAGAATGTCGTGTCAAGAGTTTTCAGCAAGCCACTGTAA 1899 0.3786 MKMKSGITVSVVMMVLFLLVELTMSLSSRDEWLALLELRSSLGIRGKDWHKKVEPCRNWTGIKCRNDQVVGISVSGLKRTRLGRLNPSFEVDSLQNFTLLESFNASGFMLNGSIPDWFGEELGTLQELDLRSCSISGVIPDSLGGMRSLKLLFLSGNNLTSRVPSSLGLLSNLSILDLSGNMFSGSVPDNFSNLGNLTRLDLSNNYLSGSIPPELGSLSNLLNLNLSDNAFTGSVPSQLGNLSKLAELDLSMNSFSGFLPGNLWSMPSLQFFDVSGNSLTGRLPKLSGLNVSTNGGTFNLSNNLFYGSVNGSTIKIKMIDLSGNYLDGVVQSSGGGLSDVTLARNCLQKIPNQRSFEDCRMFYQQRNLTFAQGDLESKKSNKRVIFILAGIFGGFGFIVLLVLVLILVLKQCHKSKDLETERGTTNRGPVTEGESPTPKDPVFVTAVGESFTFEQILHFTGNFDEANLIKQGHSGDFFWGVLENGATVVIKRVDLSSFKKESYIVELELLSKVSHARLVPILGQCMDNEKNKCIVYKYMINGDLATSLHRVSGSDGKVQSMDWITRLKIAAGAAEGLAYLHDCSPPLVHRDIRASSILLDDKFEVRLGSLSEVTSQGDFHQNVVSRVFSKPL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00303 632 Gene3D Ribonuclease Inhibitor 192 377 IPR032675 -
Tsu01g00303 632 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 11 269 - -
Tsu01g00303 632 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Tsu01g00303 632 ProSiteProfiles cAMP/cGMP binding motif profile. 468 521 IPR000595 -
Tsu01g00303 632 SUPERFAMILY Protein kinase-like (PK-like) 443 608 IPR011009 -
Tsu01g00303 632 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Tsu01g00303 632 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Tsu01g00303 632 PANTHER RECEPTOR-LIKE PROTEIN 55 11 269 - -
Tsu01g00303 632 PANTHER RECEPTOR-LIKE PROTEIN 55 265 631 - -
Tsu01g00303 632 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515
Tsu01g00303 632 PANTHER RECEPTOR PROTEIN KINASE, PUTATIVE-RELATED 265 631 - -
Tsu01g00303 632 SMART LRR_typ_2 242 266 IPR003591 -
Tsu01g00303 632 SMART LRR_typ_2 194 218 IPR003591 -
Tsu01g00303 632 SMART LRR_typ_2 170 193 IPR003591 -
Tsu01g00303 632 SMART LRR_typ_2 122 145 IPR003591 -
Tsu01g00303 632 SMART LRR_typ_2 146 169 IPR003591 -
Tsu01g00303 632 Pfam Protein tyrosine and serine/threonine kinase 469 608 IPR001245 GO:0004672|GO:0006468
Tsu01g00303 632 Gene3D Transferase(Phosphotransferase) domain 1 539 627 - -
Tsu01g00303 632 ProSiteProfiles Protein kinase domain profile. 463 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00303 632 MobiDBLite consensus disorder prediction 419 439 - -
Tsu01g00303 632 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Tsu01g00303 632 SUPERFAMILY L domain-like 49 327 - -
Tsu01g00303 632 Gene3D Phosphorylase Kinase; domain 1 434 538 - -
Tsu01g00303 632 SMART tyrkin_6 463 627 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00303 Tsu-Chr1 2486257 2491442 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Tsu01g00303 PK_Tyr_Ser-Thr 8.4e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00303 01 2486257 2491442 Tsu01g00303 01 2486257 2491442 ECH