Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00302 ATGGCTTCAACTTCAGCTTGGAcaacaaagcaaaacaaaatatttgagaATGCTTTGGCTATCTATGACAAGGACACCCCGGATCGATGGCAGAAGATTGCGAGGGTCGTCGGAGGGAAGACGGTTGAGGAAGTTAAAAGGCATTATGAGTTGCTAGTTGAAGATTTGAAGCAAATTGAGGAAGGTCATGTTCCATTGCCTAAGTACAGAAATACTCCAACAATAGGAGGTAGCATTAAAGGAGGTAGCATTAAAGGTTACACTTACAATGATGAAGAACAAAGATCGAAGTTTCTAAGCCTTCAGTGA 309 0.3883 MASTSAWTTKQNKIFENALAIYDKDTPDRWQKIARVVGGKTVEEVKRHYELLVEDLKQIEEGHVPLPKYRNTPTIGGSIKGGSIKGYTYNDEEQRSKFLSLQ 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00302 102 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Tsu01g00302 102 SMART sant 3 55 IPR001005 -
Tsu01g00302 102 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Tsu01g00302 102 CDD SANT 6 53 IPR001005 -
Tsu01g00302 102 Coils Coil 42 62 - -
Tsu01g00302 102 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 102 - -
Tsu01g00302 102 Pfam Myb-like DNA-binding domain 4 49 IPR001005 -
Tsu01g00302 102 Gene3D - 1 66 - -
Tsu01g00302 102 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 102 IPR044636 GO:0003700
Tsu01g00302 102 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00302 Tsu-Chr1 2469192 2470145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu01g00302 Myb_DNA-binding 9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00302 01 2469192 2470145 Tsu01g00302 01 2469192 2470145 ECH
Tsu01g00302 01 2469192 2470145 Tsu07g00337 07 2552978 2553343 PCT