Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00293 ATGGGTGGAATTGGAAATCTCAGTCTAATGAAGCTTTTAAAGCGGAACTGGAATGACATCTTACTTCTTCACAATATTACCAGATTTCTAGTGCTACGTATATACACACAACATATCATAATGTCATTCAAGAGCATTATGAGAGAGCTCAAGGAAATGAAAGAGGGACTTAGCAAAATGTATAGAAGAGGTGCTCCTCTATGTTCCTCAGGAACGACAGAATCATCATATGACCAGTGGGCTAACTTACCTTATGAGTTGCTATTAGACATAATTCAACGGGTGGAAGCTAGTGAAACCTCGTGGCCATCTCGTCGAGCACTTGTAGCTTGTGCGTCAGTTTGTAGATCGTGGAGAGTGATAACAAAGGGTATTGTTAAGACACTTGAACAATGTGGTATCTTCACTTTCCCTGTATCATTGAAACAGCCTGCTCCAAGGGACAATCCGATTGAGTGTTTCATTAAGAGAGACAGGGATAATTCCACTTATAGTTTATATCTTGGTTTGACCCCTGCTCTTTCCGGAGAAAATAGCAAACTGCTCTTAGCAGCAAAGAAGATTAGAAGAGCAACATGCACAGAATTCTTAATATCATTGGTTGCTGCTGATTTCTCTAAACATTACATTGGAAAGATAAGGACTAATTTTATCGGCACAAAGTTCATGATATTCGACGGTCATCCTCGACATGATTCTTCACTTCCATTGAGCTGTATTCCGCAAAGGATCCATCAGAAGCAGGTACTTCCAAAGGCTGCTCCTGCTACCGTAACCGCAACGGTATCTTATCAACTCAATATTCTTCCTGCAACTGGTCCGAGGCGAATACAGTGTACGACGCACTTAATTCCTATGTCCTCAGTCAGAGAAGGAGGAACTGCTCCTACTCCTTTGGAATTTAGCTCAACTTGCACTGATGTTGAAAGTGCACCATTGATTTTGGAAAGCAAAGCTCCTAGATGGAATGTACAACTGCAACGTTGTTTGGGAATGATCTTTAATGGTGTCTTTCTCAAAGTTAACAAAGCCACTGTGAATATGCTCCACAGGGTAGAGCCATATGTTACATACGGGTACCCTAATCTGAAGAGTGTCAAGGAATTGATCTACAAGACAAGTCTATCATTGAACAGGTGCTTGGGAAGCACGGTATCATCTGCATTGAAGATTTGA 1176 0.4124 MGGIGNLSLMKLLKRNWNDILLLHNITRFLVLRIYTQHIIMSFKSIMRELKEMKEGLSKMYRRGAPLCSSGTTESSYDQWANLPYELLLDIIQRVEASETSWPSRRALVACASVCRSWRVITKGIVKTLEQCGIFTFPVSLKQPAPRDNPIECFIKRDRDNSTYSLYLGLTPALSGENSKLLLAAKKIRRATCTEFLISLVAADFSKHYIGKIRTNFIGTKFMIFDGHPRHDSSLPLSCIPQRIHQKQVLPKAAPATVTATVSYQLNILPATGPRRIQCTTHLIPMSSVREGGTAPTPLEFSSTCTDVESAPLILESKAPRWNVQLQRCLGMIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKTSLSLNRCLGSTVSSALKI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00293 391 SUPERFAMILY Tubby C-terminal domain-like 130 328 IPR025659 -
Tsu01g00293 391 PRINTS Tubby superfamily signature 209 233 IPR000007 -
Tsu01g00293 391 PRINTS Tubby superfamily signature 256 283 IPR000007 -
Tsu01g00293 391 PRINTS Tubby superfamily signature 315 332 IPR000007 -
Tsu01g00293 391 Pfam Tub family 141 328 IPR000007 -
Tsu01g00293 391 Pfam F-box domain 80 127 IPR001810 GO:0005515
Tsu01g00293 391 SUPERFAMILY F-box domain 74 124 IPR036047 GO:0005515
Tsu01g00293 391 PANTHER TUBBY-RELATED 66 309 - -
Tsu01g00293 391 PANTHER TUBBY-LIKE F-BOX PROTEIN 66 309 - -
Tsu01g00293 391 SUPERFAMILY Ribosomal protein L30p/L7e 330 375 IPR036919 -
Tsu01g00293 391 Gene3D - 76 125 - -
Tsu01g00293 391 Gene3D Tubby Protein; Chain A 137 346 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00293 Tsu-Chr1 2404805 2408280 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g00293 Tub 2.1e-43 CL0395