Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00274 ATGTCAGGTCCTCTTGATCGCTTCGCTCGTCcatgttTTGAAGGGTTTTCTGGTCATCAtgatgaaagaagagagagaaaatcagATTTTGAGAATTCGGAAGATGATCGGCGAACAAGAATTGGGAGTTTGAAAAAGAAAGCGATAAATGCTTCGAGTAAATTTAGGCATTCTCTTAGGAAGAAAAGCCGGAGAAAGAATGCAAGCCGGAGTAATTCGCTCGCAATTGAGGATGTTCGAGATGTTAAGGAGTTACAAGCAGTGGATGCTTTTCGACATTCACTTATTTCAGATAGTTTGTTGCCATCAAGACTTGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAGGCAAAGCAGATGTGGGCCAACATGATCCAATGGAGGAAAGAGTATGGTACCGATTCAATTATGGAGGATTTTGAGTTCAGTGAGTTGGACGAAGTCATGCAATACTATCCACATGGTTATCATGGTGTTGATAAGGAAGGAAGACCTATTTATATTGAAAGACTAGGTAAAGTTGATCCCAATAAGCTTATGCAAGTAACTACCATGGAAAGGTATTTAAAATACCATGTACAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCTTGTTCTATTGCTGCAAAGAGACATATAGATTCAAGCACAACCATTTTGGATGTTCATGGTGTGGGTTTCAAAAACTTCACAAAAACTGCACGGGAACTTGTTATGCGGCTGCAGAAAATTGATGGTGACTATTATCCCGAAACACTATGCCGAATGTTTATAATCAATGCGGGTCCTGGTTTCAAGCTGCTTTGGAACACAGTGAAAACATTCATTGATCCCAAAACTAGTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAATAAGTTGTTTGAAATTATTGATGCCAGTGAGCTGCCAGAATTTCTTGGTGGTAGTTGTACTTGTATAGATCAAGGCGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGATCCAAACATTTTAAAGATGGTTCTCAATGGTGAAATACAATGTCCGAGACAAATAGTAACAATTTCTAATGACGAGGGGACAGTGATTCAATGTGATAAGGCATCTTATCCAATGATAAGAAGTAGTGATACATCAACTGGAGAATCAGGGTCTGAAGTTGAAGATATCACTTCCCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTGACTCCTGTCCATGAAGAAGCAAGGTTTGCTGGTAGGGCTGGTCTTTCTGCCGGTTTCCCTGAGTATGATGAGTACGTTCCCATGGTTGACAAGACTGTCGATGTTGCATGGAAGGAGAAACAAGTGACAACTCAAAAGTCATATAGCACAACAGAAAAATATCTATCGAGGACTGGAAGATCGGACGGAAAGAGTTCATATATATGGGCTATTATCATTGGCTTCTTTGTTGCCATTTTTACTTTTGCTCGTTCAATAGCATTTCGTATGACTAAGGGAATAAAGGACAATGACTCTGACCGTGTCCAGCCAACAACCAAGGAGGAATCTCGTCCCGCATCACCTGCTCCCAGATCAATAAAGGAAGAACTTGTCCCATCTGCTTTGAAACGCCTTTGTGAGCTTGAAGAGAAGGTTGAAATGCTGCAGTCAAAACCTGATGTAATGCCATGTGAGAAAGAGGAGCTTCTGAATGCTGCTGTTTATCGTGTGGATGCCTTGGAAGCTGAATTGATCACTACAAAGAAGGCTTTATATGAAGCTTTGATTAGACAAGAAGAACTTATGGCATACATAGATAGTCAGGAAAGAAGAAAATTCGAGAAAAGGAAGTTTTGCTCGTTTTGA 1857 0.3947 MSGPLDRFARPCFEGFSGHHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSRRKNASRSNSLAIEDVRDVKELQAVDAFRHSLISDSLLPSRLDDYHMLLRFLKARKFDIEKAKQMWANMIQWRKEYGTDSIMEDFEFSELDEVMQYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMERYLKYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNFTKTARELVMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFIDPKTSSKINVLGNKFQNKLFEIIDASELPEFLGGSCTCIDQGGCMRSDKGPWQDPNILKMVLNGEIQCPRQIVTISNDEGTVIQCDKASYPMIRSSDTSTGESGSEVEDITSPKASGNYTNPRLTPVHEEARFAGRAGLSAGFPEYDEYVPMVDKTVDVAWKEKQVTTQKSYSTTEKYLSRTGRSDGKSSYIWAIIIGFFVAIFTFARSIAFRMTKGIKDNDSDRVQPTTKEESRPASPAPRSIKEELVPSALKRLCELEEKVEMLQSKPDVMPCEKEELLNAAVYRVDALEAELITTKKALYEALIRQEELMAYIDSQERRKFEKRKFCSF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00274 618 Gene3D - 24 139 - -
Tsu01g00274 618 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Tsu01g00274 618 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Tsu01g00274 618 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Tsu01g00274 618 CDD SEC14 153 320 IPR001251 -
Tsu01g00274 618 MobiDBLite consensus disorder prediction 53 72 - -
Tsu01g00274 618 SUPERFAMILY CRAL/TRIO N-terminal domain 83 148 IPR036273 -
Tsu01g00274 618 MobiDBLite consensus disorder prediction 1 43 - -
Tsu01g00274 618 MobiDBLite consensus disorder prediction 53 68 - -
Tsu01g00274 618 Gene3D - 140 351 IPR036865 -
Tsu01g00274 618 MobiDBLite consensus disorder prediction 507 529 - -
Tsu01g00274 618 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Tsu01g00274 618 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Tsu01g00274 618 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Tsu01g00274 618 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 614 - -
Tsu01g00274 618 MobiDBLite consensus disorder prediction 13 43 - -
Tsu01g00274 618 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 614 - -
Tsu01g00274 618 Pfam CRAL/TRIO, N-terminal domain 109 131 IPR011074 -
Tsu01g00274 618 MobiDBLite consensus disorder prediction 380 409 - -
Tsu01g00274 618 SMART sec14_4 152 323 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00274 Tsu-Chr1 2274216 2278970 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00274 01 2274216 2278970 Tsu01g00274 01 2274216 2278970 ECH