Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00265 atgaagacaTGCGCATGCTTTAATGGTTCAATTATTCTTCactcattcaattcaattcaatttcaacaacgctatcttcatcatcattatataaACGTTCCTTCATTATCTATTCGCTCTCTTAAAGCTATACCGCGCAACATTGAAGCTGAACTTTCTTCTTCAAACGACGCCGTTTTACCTCTAAACCAAAATACTCCGATTGAGTTTCAACCACCGCTACAAAACGAAGATGCGCCATCTCCGACTCCGGTTGTTCTCTCCGATGAAGATAAAGTCACTACTAAGcttaaaaagaagaaagaacaaAACGATGATAACAGTAGTAGCAACTTTGATGACCGTTTCAAGCTCCGTAATGGAAAAGAGgtttttgaaGAGAAAGCTTATCTAGTTGGTGTTGAGCGAAAAGGTGAAGCTAGTGATTCCTTTAGTATAGAAGATTCTTTGAGTGAATTGGAACAGTTAGCTGATACTGCTGGATTATTGGTTGTTGCTTCTACTTATCagaaGCTTGCTTCTCCAAACCCTAGGACGTACATTGGCTCCGGCAAAGTTTCTGAAATTAAGAGTGCAATTAGTGCATTGGACGTTGAAACTGTGATATTTGATGACGAACTATCAGCTGGGCAACTGCGCAACCTGGAAAAAGTTTTTGGTGGAAATGTGAGAGTTTGTGATCGAACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACACATGAAGCATCTTTACAGGTTGCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGAGGACAGGTTAAGGGAATgggtgaaaaacaaaaagaagtggACAAACGTATTTTGCGTGACCAAATTAGTGTTCTTAAAAAAGAGCTAGAAACTGTTAGGAAACATCGAAAGCAGTACCGTAATAGGCGTGTCTCAGTACCCGTGCCAGTGGTATCCTTGGTGGGTTACACAAATGCTGGTAAGAGTACGCTTTTAAATCAATTAACTGGAGCAGATGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACAAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACCGACACCGTTGGTTTTATTCAAAAGTTGCCTACTACACTAGTTGCTGCCTTCAGAGCCACACTGGAGGAGATATCAGAGTCATCACTTTTGGTGCATGTTATTGATATCAGTCACCCCTTGGCCGAGCAACAGATAAATGCTGTGGACAAAGTCCTGTCAGAACTAGATGTATCATCAATTCCTAGATTGATTGTCTGGAACAAGATTGATAAGGCTAGTGATCCCCAGAAAATCAGGCTAGAAGCTGAAAAAAGAGACGATGTTGTTTGCATATCTGCTTTAAGCGGTGATGGTGTACAAGAATTCTGTAATGCAGTTCAAGACAAACTAAAGGACTCCATGGTATGGGTGGAAGCTTTGTTACCATTCGAAAATGGGGACCTTCTCAGCACCATTCACCAGGTTGGAATGGTTGAGAAAACTGAATATACGGAGCAAGGGACATATATCAAGGCTCATGTGCCCCTACGTTTTGCGAGAATGCTTACACCTATGAGGCAACTGTGTGTACCACGATCTTAG 1647 0.3886 MKTCACFNGSIILHSFNSIQFQQRYLHHHYINVPSLSIRSLKAIPRNIEAELSSSNDAVLPLNQNTPIEFQPPLQNEDAPSPTPVVLSDEDKVTTKLKKKKEQNDDNSSSNFDDRFKLRNGKEVFEEKAYLVGVERKGEASDSFSIEDSLSELEQLADTAGLLVVASTYQKLASPNPRTYIGSGKVSEIKSAISALDVETVIFDDELSAGQLRNLEKVFGGNVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQSGGGQVKGMGEKQKEVDKRILRDQISVLKKELETVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLAEQQINAVDKVLSELDVSSIPRLIVWNKIDKASDPQKIRLEAEKRDDVVCISALSGDGVQEFCNAVQDKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARMLTPMRQLCVPRS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00265 548 Gene3D - 240 308 - -
Tsu01g00265 548 MobiDBLite consensus disorder prediction 91 114 - -
Tsu01g00265 548 Pfam GTP-binding GTPase N-terminal 147 236 IPR025121 -
Tsu01g00265 548 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 323 489 IPR030394 GO:0005525
Tsu01g00265 548 CDD HflX 282 485 IPR030394 GO:0005525
Tsu01g00265 548 Hamap GTPase HflX [hflX]. 150 514 IPR016496 GO:0005525
Tsu01g00265 548 Coils Coil 289 316 - -
Tsu01g00265 548 Pfam HflX C-terminal domain 455 523 IPR045498 -
Tsu01g00265 548 Pfam 50S ribosome-binding GTPase 325 443 IPR006073 GO:0005525
Tsu01g00265 548 PANTHER GTP-BINDING PROTEIN HFLX 100 533 IPR016496 GO:0005525
Tsu01g00265 548 Pfam GTP-binding GTPase Middle Region 239 317 IPR032305 -
Tsu01g00265 548 Gene3D - 322 490 IPR027417 -
Tsu01g00265 548 MobiDBLite consensus disorder prediction 63 114 - -
Tsu01g00265 548 PANTHER GTP-BINDING PROTEIN 6-RELATED 100 533 - -
Tsu01g00265 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 496 IPR027417 -
Tsu01g00265 548 TIGRFAM small_GTP: small GTP-binding protein domain 324 480 IPR005225 GO:0005525
Tsu01g00265 548 Gene3D - 140 239 IPR042108 -
Tsu01g00265 548 PRINTS GTP1/OBG GTP-binding protein family signature 392 410 IPR006073 GO:0005525
Tsu01g00265 548 PRINTS GTP1/OBG GTP-binding protein family signature 325 345 IPR006073 GO:0005525
Tsu01g00265 548 TIGRFAM GTP_HflX: GTP-binding protein HflX 129 484 IPR016496 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00265 Tsu-Chr1 2197577 2204086 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00265 01 2197577 2204086 Tsu01g00265 01 2197577 2204086 ECH