Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00260 ATGGCAGCAGAAGAGGGACAAGTCATCAGTGTTCATACCGTTGAATCATGGAAGGAACAGATCCAGAAGGGAAACGACTCCAAAAAATTGATTGTGGTGGATTTTACTGCTTCATGGTGTGGTCCATGCCGTTTTATTTCCCCAATTCTAGCAGATATTGCTAAGAAGACACCTCAAGTCATCTTCCTCAAGGTGGATGTGGATGAATTAAAGAGTGTTGCTGAGGAATGGTCTGTTGAGGCTATGCCAACCTTCTTGTTCTTGAAAGAAGGTAAGGAAGTGGATAAGGTAGTAGGTGCTAAGAAGGAAGAACTTCAAACTGCAGTGACCAAGCATGCTACTGTTTGA 348 0.431 MAAEEGQVISVHTVESWKEQIQKGNDSKKLIVVDFTASWCGPCRFISPILADIAKKTPQVIFLKVDVDELKSVAEEWSVEAMPTFLFLKEGKEVDKVVGAKKEELQTAVTKHATV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00260 115 SUPERFAMILY Thioredoxin-like 5 112 IPR036249 -
Tsu01g00260 115 PRINTS Thioredoxin family signature 78 89 - -
Tsu01g00260 115 PRINTS Thioredoxin family signature 39 48 - -
Tsu01g00260 115 PRINTS Thioredoxin family signature 31 39 - -
Tsu01g00260 115 ProSiteProfiles Thioredoxin domain profile. 1 114 IPR013766 -
Tsu01g00260 115 ProSitePatterns Thioredoxin family active site. 32 50 IPR017937 -
Tsu01g00260 115 Gene3D Glutaredoxin 1 114 - -
Tsu01g00260 115 PIRSF Thioredoxin 7 114 IPR005746 GO:0015035
Tsu01g00260 115 PANTHER THIOREDOXIN 3 114 - -
Tsu01g00260 115 PANTHER THIOREDOXIN 3 114 - -
Tsu01g00260 115 Pfam Thioredoxin 10 110 IPR013766 -
Tsu01g00260 115 CDD TRX_family 19 109 - -
Tsu01g00260 115 TIGRFAM thioredoxin: thioredoxin 16 112 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00260 Tsu-Chr1 2152005 2153840 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00260 01 2152005 2153840 Tsu01g00260 01 2152005 2153840 ECH
Tsu01g00260 01 2152005 2153840 Tsu07g00303 07 2338235 2339721 PCT