Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00259 ATGTCTTTACTCACTTCACCACCACCTTCATTTCTCACTATTCCTTCACACAAAACTCATTTCTTCGTTTCTACTCATCACTTCCTTCCACTTCAACTTCCACCAAGgAGCATCAAATTCCAACACAAATGGAAAACAATAGAATGCAAAGTTACAACGAATTTAAATGCTCCACCGTCAACATCAACAGCGTTAACGAAAGAACCACACAAATACTTCGACCAAGTAGTTATAACCGTTCGTGGAGGAGACGGAGGTCACGGAGCAATACTGAATCAAAAACCTAAAAAGGAAATTGAAaaagtaaaaggaaaaaaagcgaataatgataataattataagaaaaGTGCATTGAAGAGAGATTTTGATGGTTCTTTGATACTTCCAATGGGAGGTCATGGTGGTGATGTTGTTATTTATGCAGATGAAAGTAAAGATACGTTGTTAGAGTTTCATAATAAGAATCGATTTAATGCGAAACGCGGTGGCAATGTTGATGCAGTTGGTGTTTTTACTTCTTATTTGCGGAATGGAATTCCTGCACCTACTGTTCGTATTCCTGTTCCTCTAGGTACAGTTGTGAAAAGCAAACGGGGAAAGATGTTAGCTGATTTAGCACGACATGGTGATGAAGTTCTTGTTGCGAGGGGTGGACAAGGAGGGATTAGCTTGTTAGAAATGCCACGACATAATAGGAAAAAAACGACGAGTTTGACAAGTAATGTGATGAGAGATGACTCAGATAAGGTTTTAATTCACGGTCAACCTGGAGAGGAGGTTAAGTTGGAGTTGATCCTACGAGTTGTAGCTGACGTTGGTTTGATTGGACTTCCAAATGCTGGGAAATCAACACTTCTGGCAGCCATTACACTTGCAAAACCCGATATTGCCGATTATCCTTTTACAACATTAATGCCAAATCTTGGACGCCTTGATGGTGATCCCAACTTGGGAGCAGGGATGTATTCATCTGAAGCTACATTAGCAGATTTGCCTGGTCTTATAGAAGGCGCTCACTTGGGAAAGGGTCTTGGTCGCAATTTTTTAAGGCATCTGAGGAGAACCCGGCTATTGGTCCATGTTGTTGATGCATCTACTGAAAACCCCGTAAATGACTACAGAACTGTCAGAGAAGAGTTGCGCATGTATAATCCCGAGTACCTTGGACGACCATACATTGTTGTTTTGAATAAGATTGACCTGCCAGAGgTTATAGACAGGCTTCCAACTTTGACTCGAGAAATTCAAAGAATTGGCAGTGATGGTGCAGCTTCTGAACCAAAACCAAGCGCTGAAATTTCTGCTCAATTATTTTCCGATGAAAGTGATACAAAGGAAAAAACACTAGATGATTATCCCCGACCTCACTCTGTTATCGGAGTTAGTGTTCTAAAGCGTATCAAGATTAATGAGATGTTAAAGGAAATAAGAGCCGCTTTAAGGCAGTGCGTTGATTCTAATGAGCCATTGGCTTCCAGTGTGCCGTCGTGA 1491 0.4011 MSLLTSPPPSFLTIPSHKTHFFVSTHHFLPLQLPPRSIKFQHKWKTIECKVTTNLNAPPSTSTALTKEPHKYFDQVVITVRGGDGGHGAILNQKPKKEIEKVKGKKANNDNNYKKSALKRDFDGSLILPMGGHGGDVVIYADESKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIPAPTVRIPVPLGTVVKSKRGKMLADLARHGDEVLVARGGQGGISLLEMPRHNRKKTTSLTSNVMRDDSDKVLIHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDASTENPVNDYRTVREELRMYNPEYLGRPYIVVLNKIDLPEVIDRLPTLTREIQRIGSDGAASEPKPSAEISAQLFSDESDTKEKTLDDYPRPHSVIGVSVLKRIKINEMLKEIRAALRQCVDSNEPLASSVPS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00259 496 CDD Obg 270 435 IPR031167 GO:0005525
Tsu01g00259 496 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 270 481 IPR031167 GO:0005525
Tsu01g00259 496 ProSitePatterns GTP1/OBG family signature. 330 343 IPR006074 GO:0005525
Tsu01g00259 496 SUPERFAMILY Obg GTP-binding protein N-terminal domain 131 237 IPR036726 -
Tsu01g00259 496 Pfam GTP1/OBG 131 267 IPR006169 -
Tsu01g00259 496 PRINTS GTP1/OBG GTP-binding protein family signature 293 311 IPR006073 GO:0005525
Tsu01g00259 496 PRINTS GTP1/OBG GTP-binding protein family signature 345 363 IPR006073 GO:0005525
Tsu01g00259 496 PRINTS GTP1/OBG GTP-binding protein family signature 328 343 IPR006073 GO:0005525
Tsu01g00259 496 PRINTS GTP1/OBG GTP-binding protein family signature 272 292 IPR006073 GO:0005525
Tsu01g00259 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 480 IPR027417 -
Tsu01g00259 496 Gene3D GTP1/OBG domain 71 268 IPR036726 -
Tsu01g00259 496 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 44 489 IPR045086 GO:0003924|GO:0005525
Tsu01g00259 496 Gene3D - 269 488 IPR027417 -
Tsu01g00259 496 TIGRFAM small_GTP: small GTP-binding protein domain 271 415 IPR005225 GO:0005525
Tsu01g00259 496 MobiDBLite consensus disorder prediction 419 452 - -
Tsu01g00259 496 Pfam 50S ribosome-binding GTPase 271 398 IPR006073 GO:0005525
Tsu01g00259 496 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 44 489 - -
Tsu01g00259 496 ProSiteProfiles Obg domain profile. 70 269 IPR006169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00259 Tsu-Chr1 2145309 2150839 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00259 01 2145309 2150839 Tsu01g00259 01 2145309 2150839 ECH