Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00258 ATGATGAAATCAGGTATGGGaattgaagagagaaataagctAAAAAGGCCAGCACAAGCAAGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGACCTGAAAATGCAAGTTGTACCTATAAAGGTGTGAGACAGAGAACATGGGGCAAATGGGTTGCTGAAATTCGTGAACCTAACCGTGGTGCACGTCTTTGGTTAGGTACTTTTGAAACTTCTCATGAAGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAACTTTATGGTTCTGATGCAAAACTCAACCTTCCTGAACTTTCTACACCTTCTGTTCATTCCCCTAAAAAATCATCATCCTCTGCGACAATAAAACAAACACCTCATATGCAACAaccacaaattcaaattcaacacAACCCCAATAACACCAATTTCAATATTTCATCTCTCAATTcttgcaacaacaacaacaacatcaacataaacataaacaacaacattcacaatcacaacaacaacaactctgTTTTTGTGTCTCTGTCATCACAACAAATTGGTGATGTTGCACCAATATATAGCAATGATTCAATTATGTCATTTCCAATGGAAGAACAAATTGAACAAAGCTATAATAATTATTCGAAGGGTATGGTGGAAAGTAATAATCATGATGATTCATTTTTTGGAACATTGAATTATGAAACCATGCCAGTTATTGATGATGATTCAATTTGGACAGAGGCTGCTATGTCTTTAGATTCTGCTATTTCACTGGATTTTCCAATGATAGCTGATGCTGATGGAATTTATAATTCAGGTGGAAATTTTGCTGAAGTTGGTGCTTGGGATTCTCTACAAACTCCATGGTGCATGTAA 852 0.3228 MMKSGMGIEERNKLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSTPSVHSPKKSSSSATIKQTPHMQQPQIQIQHNPNNTNFNISSLNSCNNNNNINININNNIHNHNNNNSVFVSLSSQQIGDVAPIYSNDSIMSFPMEEQIEQSYNNYSKGMVESNNHDDSFFGTLNYETMPVIDDDSIWTEAAMSLDSAISLDFPMIADADGIYNSGGNFAEVGAWDSLQTPWCM 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00258 283 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Tsu01g00258 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 276 - -
Tsu01g00258 283 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Tsu01g00258 283 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Tsu01g00258 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 276 - -
Tsu01g00258 283 MobiDBLite consensus disorder prediction 1 38 - -
Tsu01g00258 283 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Tsu01g00258 283 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g00258 283 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Tsu01g00258 283 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tsu01g00258 283 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Tsu01g00258 283 MobiDBLite consensus disorder prediction 97 123 - -
Tsu01g00258 283 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00258 Tsu-Chr1 2139675 2140555 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g00258 AP2 9.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00258 01 2139675 2140555 Tsu01g00258 01 2139675 2140555 ECH
Tsu01g00258 01 2139675 2140555 Tsu07g00300 07 2318356 2319066 PCT