Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00256 ATGGATCGCCGTTTCCTCTTAGCCCTCTCCCTCATAGCCGCCGTAGCAACCGCCGCAGCAACCGCCGCAACCGATGACACCACTTCCGACGATCTTATCATCCGACAAGTCGTCGATAACGCAGAAGATCATCTACTAAACGCAGAACATCACTTCTCTTCCTTCAAGTCAAAGTTCAGCAAAACCTACGCAACAAAAGAGGAACACGATTACCGATTCGGAGTTTTCAAGtcgaatctcatcaaagctaaGCTTCATCAGAAGCTTGATCCTTCCGCGGAACACGGAATCACTAAGTTTTCCGATTTAACGGCGTCTGAGTTCCGTCAGTTTCTTGGACTTAAGAAAGGTCTCGGTTTACCTGCTCATGCTCAGAAAGCTCCGATCCTCCCTACCAACAATCTTCCAGAGGATTTCGATTGGCGCGAGAAAGGCGCTGTTACTCCGGGTTCATGCGGTTCGTGTTGGGCGTTTAGTACAACTGGAGCGTTGGAAGGAGCACACTATTTGGCTACTGGAAAGCTAGTGAGTCTTAGTGAGCAGCAGCTTGTGGATTGCGATCATGTGTGTGATCCAGAGGAATATAACTCATGTGACTCGGGTTGTAACGGTGGATTGATGAACAATGCTTTTGAATACTTACTCCAGTCTGGGGGAGTAGTGGCAGAAAAGGACTATGCTTACACTGGAAGAGACGGCACTTGCAAATTTGACAAAAGCAAGGTTGTTGCTTCCGTATCTAATTTCAGTGTGGTTTCTCTAGACGAAGAACAGATTGCTGCAAATCTAGTAAAGAATGGCCCTCTTGCAATTGCTATTAATGCTGCCTGGATGCAGACCTATATGAGTGGTGTCTCATGCCCATACATCTGTGCAAAAGGACGTTTGGATCATGGGGTTCTTCTAGTTGGCTTTGGAAAAGGTGGTTATGCTCCCATTCGATTGAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGGGAGAACTGGGGAGAGGAGGGTTATTACAAGATCTGCAGAGGCCGAAATGTATGTGGAGTGGATTCAATGGTCTCAACTGTAGCTGCAGCTCAAATCAGTCATTAA 1089 0.4601 MDRRFLLALSLIAAVATAAATAATDDTTSDDLIIRQVVDNAEDHLLNAEHHFSSFKSKFSKTYATKEEHDYRFGVFKSNLIKAKLHQKLDPSAEHGITKFSDLTASEFRQFLGLKKGLGLPAHAQKAPILPTNNLPEDFDWREKGAVTPGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEEYNSCDSGCNGGLMNNAFEYLLQSGGVVAEKDYAYTGRDGTCKFDKSKVVASVSNFSVVSLDEEQIAANLVKNGPLAIAINAAWMQTYMSGVSCPYICAKGRLDHGVLLVGFGKGGYAPIRLKEKPYWIIKNSWGENWGEEGYYKICRGRNVCGVDSMVSTVAAAQISH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00256 362 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Tsu01g00256 362 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Tsu01g00256 362 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Tsu01g00256 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Tsu01g00256 362 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Tsu01g00256 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Tsu01g00256 362 SMART pept_c1 135 356 IPR000668 GO:0006508|GO:0008234
Tsu01g00256 362 CDD Peptidase_C1A 136 355 IPR039417 -
Tsu01g00256 362 Pfam Papain family cysteine protease 135 354 IPR000668 GO:0006508|GO:0008234
Tsu01g00256 362 Gene3D Cysteine proteinases 21 356 - -
Tsu01g00256 362 SMART Inhibitor_I29_2 52 108 IPR013201 -
Tsu01g00256 362 PANTHER CYSTEINE PROTEASE RD19C-RELATED 34 357 - -
Tsu01g00256 362 SUPERFAMILY Cysteine proteinases 48 354 IPR038765 -
Tsu01g00256 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00256 Tsu-Chr1 2103858 2106062 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00256 01 2103858 2106062 Tsu01g00256 01 2103858 2106062 ECH
Tsu01g00256 01 2103858 2106062 Tsu07g00148 07 1125910 1127561 PCT