Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00255 ATGGCAGGTTTCTTCTCTCTAAATAGTGGAAGAGGAAAAGAAGAAGCaagagaacaacaacaacaagaagaaaATAACAATAATCAGTTTCATTTCAGAAACGAAGAGATCTACAACAAAGGCTTTGAGATATGgccacaacaacatcaacaagcttcttttcatcatcaacaacagcaTCAACAAAACATTAACAATTTCTACTCGTTCGGCGTTGGTAGTTCATCTCGAAGAAACGAAAACACCGGCAATAACTTACATGATGATGGTTCTGTTTCTTTTTCCGATGAATCAACGAGATTTGGATTAACTGTGATAAGgtctggtggtggtggtggtgttgctGGTGGTTTAGGTGGTGGAGGAATGAACTGTCAAGACTGTGGTAACCAGGCTAAGAAAGATTGTCCACATCTTAGATGTAGAACTTGTTGTAAGAGTAGAGGTCTTCAGTGTCAAACTCATGTTAAAAGTACTTGGGTTCCTGCTGCTAAACGACGTGAGCGACAACAGCAGCTCACGTCGTTGCAGCAGAACCAACAACATCAGTTTCACTCGTCGAGAAGACAAAGAGAAATTAATCCAAACGATCCTTCTGCTGGAGGAGGAGCTTCTGGTTCTCTTGCTTGTAGTCCAATACCTATCACTTCAACagGGTTGGAGGTTGGAAATTTTCCACCGGAGCTAAATTCTCCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCATTGGATGCACAAGATGAGCGTTACGCGTATCAAACGGCTGTGAACATAGGAGGAAGAGTTTTCAAGGGAATTTTGTATGATCAAGGACTTGAAGGTAATTACACTAGTGCAAATGCtagtggtggtggtgttggtgAGGGTTCttctggtggtggtggtgaaggAAACTTTCAAAATCTGATTACAACTGCCACAACAAATGTTAGTAATCCGTTTGAGTATTCATCACTCTATCCAGCTCCATTGAATGCCTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1020 0.3618 MAGFFSLNSGRGKEEAREQQQQEENNNNQFHFRNEEIYNKGFEIWPQQHQQASFHHQQQHQQNINNFYSFGVGSSSRRNENTGNNLHDDGSVSFSDESTRFGLTVIRSGGGGGVAGGLGGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGLQCQTHVKSTWVPAAKRRERQQQLTSLQQNQQHQFHSSRRQREINPNDPSAGGGASGSLACSPIPITSTGLEVGNFPPELNSPAVFRCVKVSALDAQDERYAYQTAVNIGGRVFKGILYDQGLEGNYTSANASGGGVGEGSSGGGGEGNFQNLITTATTNVSNPFEYSSLYPAPLNAFMAGTQFFPPPRS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00255 339 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 337 - -
Tsu01g00255 339 MobiDBLite consensus disorder prediction 72 93 - -
Tsu01g00255 339 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 225 272 IPR006511 -
Tsu01g00255 339 MobiDBLite consensus disorder prediction 168 184 - -
Tsu01g00255 339 MobiDBLite consensus disorder prediction 1 31 - -
Tsu01g00255 339 MobiDBLite consensus disorder prediction 166 208 - -
Tsu01g00255 339 Pfam Domain of unknown function (DUF702) 122 273 - -
Tsu01g00255 339 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 337 IPR007818 GO:0003700|GO:0006355
Tsu01g00255 339 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 124 166 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00255 Tsu-Chr1 2091164 2092648 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu01g00255 DUF702 3.3e-62 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00255 01 2091164 2092648 Tsu02g02457 02 25066127 25067024 ECH
Tsu01g00255 01 2091164 2092648 Tsu01g00255 01 2091164 2092648 ECH
Tsu01g00255 01 2091164 2092648 Tsu07g00295 07 2265278 2266513 PCT