Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00254 ATGAAGATCCAATGTGACGTTTGTAGCAAAAATGAAGCTTCATTATTCTGCACCGCTGATGAAGCCGCCCTCTGCACCGACTGTGACCACCGTGTCCACCACGCCAACAAACTTGCTTCCAAACACCACCGCCTCTCTCTTCACAGCCCTTCTCCTAAACAACACCCTCTCTGTGATATTTGTCAGGAGAGAAGAGCTTTTGTGTTGTGTAAGCAAGATAGAGCAATTCTATGCAAAGATTGTGATTCATCAATTCATTCTGTAAACGAACTTACAGAGAAACATGATAGGTTTTTTCTCACTGGTATTAAACTTTCAACTACaaactcttcttcttcatcatcatcaacaacaacatcaacaaaacCTTCTTCACCTATTTCCATTTCCAAGTCAATTCTTGTtccttcatcttcctcttcttctttgaTCGATAAATCCACTGCTCCTTCACCAAAATCTGTGGAAGATGGCGGTTCTACTATTTCTCAGTACTTGATTGAGACTTTACCTGGTTGGCAAGTTGATGACTTTCTTGATTCTTCCTCTGTTCCCTTTGCTTTCTCTAAgGGTGATGAatcatttgaagaaaatcttgaTTCATTTTTTCCCAATACAAATTTGGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATACTTCTTCACAAATCATGATGGGGCAGAGTGAGACAACAACAAAGAAAGggagcaacaacaacaacaacaaaaacaacatgaaCAAATCAAGGTTGAGAAATGATGggaataataatattttcacaGTTCCACAGATTAGTCCTGTTTACAATCCCAAGAGAACAAGATATCTATGGTAG 843 0.3405 MKIQCDVCSKNEASLFCTADEAALCTDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTEKHDRFFLTGIKLSTTNSSSSSSSTTTSTKPSSPISISKSILVPSSSSSSLIDKSTAPSPKSVEDGGSTISQYLIETLPGWQVDDFLDSSSVPFAFSKGDESFEENLDSFFPNTNLGIWVPQAPPPSLYTSSQIMMGQSETTTKKGSNNNNNKNNMNKSRLRNDGNNNIFTVPQISPVYNPKRTRYLW 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00254 280 MobiDBLite consensus disorder prediction 139 158 - -
Tsu01g00254 280 MobiDBLite consensus disorder prediction 232 266 - -
Tsu01g00254 280 Gene3D Classic Zinc Finger 1 95 - -
Tsu01g00254 280 MobiDBLite consensus disorder prediction 107 130 - -
Tsu01g00254 280 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 277 - -
Tsu01g00254 280 CDD Bbox1_BBX-like 57 100 - -
Tsu01g00254 280 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Tsu01g00254 280 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Tsu01g00254 280 CDD Bbox1_BBX-like 5 47 - -
Tsu01g00254 280 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Tsu01g00254 280 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Tsu01g00254 280 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu01g00254 280 SMART bboxneu5 53 100 IPR000315 GO:0008270
Tsu01g00254 280 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00254 Tsu-Chr1 2066025 2067985 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tsu01g00254 zf-B_box 1.5e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00254 01 2066025 2067985 Tsu01g00254 01 2066025 2067985 ECH
Tsu01g00254 01 2066025 2067985 Tsu07g00098 07 662987 664656 PCT