Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00227 ATGAGTTCCTTAGAAGAAAAGGTTAAAAGTGTTGGAGTTGGGGTTGGAGCACTTGCTGCTGAGATGAAATTGCTTAAAGAAATGCAGGAACATTGtggGGTAAGAAAGACTTTAAATTCAGAGTTATGGCATGCTTGTGCTGGTCCTCTTGTGTCTTTGCCTCAAGTGGGTGGTCTTGTTTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAACAGCAACTTCACAGATTCCAAACTACCCTAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTTACATTACATGCTGATAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCATTGAATTCTGAAAAAGAAGTGTTTCCTATATCTGAGTTTGGACTAAACAAAAGTAAACATCCGACTGAATTTTTCTGCAAAACATTGACCGCTAGTGATACTAGCACACATGGCGGATTTTCTGTTCCGCGCAGGGCTGCGGAAAAGCTATTTCCTCCGTTGGATTACACAATTCAACCACCGACTCAAGAACTTGTTGTTCGAGATTTGCATGACAATACATGGACATTTCGACATATCTACCGAGGTCAGCCGAAGAGACACCTTCTCACAACGGGGTGGAGTTTGTTTGTAGGCTCAAAAAGGCTTCGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCACAATTGCGAGTTGGTGTCCGGCGTGCTAATCGTCAACAGACAGCACTACCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACGATTTTCTACAATCCAAGGGCATGTCCATCCGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGCGACTCAGCTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAACGCAGATATATGGGCACAGTTGTTGGTATCAGTGATGTCGATCCATTAAGGTGGCCTGGTTCAAAGTGGCGAAATATTCAGACCGAATGGGATGAGCCAGGGTGTGGTGATAAACAAAATCGAGTTAGCGTATGGGAGATTGAAACTCCTGAAAGTCTTTTTATATTTCCTCCCATGACTTCGAGTCTAAAACGGCCGTTTCAATCCGGATTTCCGGAAAATGAGTGGGGGAGTTTGTTAAGAAGACCTTTTATTAAAGCACCTGAAAATGGAACAATGGATCTCTCAAACTCAATGGCAAATCTCTACCAAGAAAACATAATGAAGATGCTTTATAAACCACAAGTTATCAACAACAATGGAACCTTTTTACCTGTCATGCAACAAGAATATGTTCCTACCCGAGTTCCCGTGCAAGATATGAAGCCATTGCAGGCAATAGAGAATCCAAACGTTCATCTTTCAAGTACAGAAAGCATAATACCTAATTCCTTAAACATGCATTCAATGTTAAAAAGTGATGAACCTGAAAAATTGCACCCTTTGGCCAAAACCGATAAGCTCAAAATAGAATCCGAGGCGTTACCTGATAATATGTTTGACTTTCCTCCTTTTGAAGGCAGCAGTATTGAGGCCGCAAACCAGTTAACATATCATAATCAAAACCAAGATCCATCACTCACTCAAACTAGTCCATGGCCTATGCAGCAGCCTCAGTTAGAATCATCGTTATTGCATCCTCAACTGATTGATACTGTCCAACCTGATTCTTCTATTATAAACGGCATGCTTCCTCAGCTAGACGTTGACGAATGGATGACGTATTCTTCTTGCCAACATCAAGTAGTGAATCCCTCTATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCAGATGAAAGCAATAACCAAAGTGAAATTTGTGCCAGTGTTGATGTTAGTAATAGTGTGAATAACGCCACTATGGCTGATCCTTCTACTTCACACACCATTTTCGACGACTTTTGCACAATGAAGGAGAAAGATTTTCAGCAACCTCAAGACTGCAAAGTCGGCAACTTAAGTTCTAGTCAGGATGGCCAGTCTCAGATAACCTCCGCAAGTCTAGCAGATTCGCATGCCTTTCCTCTGCGAGACAACTCGGGTGGTACATCTTCAAGCCatgttgattttgatgaaagTAGCTTTCTGAATAATAACTCATGGAAGCAAGTAACTGCACCGATCCGAACCTACACAaagGTGCAAAAAGCAGGTTCTGTCGGAAGATCAATTGATGTAACTACTTTCAAGAACTATGAAGAGTTGGTCCGCGCTATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAATTAGTATATGTAGATTATGAGAGCGATGTTCTACTCGTTGGAGATGATCCTTGGGAGGAATTTGTGGGATGTGTTCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTCAACAGTGGAGCATTGCAAGGAATCAATGTTTGA 2559 0.4138 MSSLEEKVKSVGVGVGALAAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYATQLSVGMRFGMMFETEESGKRRYMGTVVGISDVDPLRWPGSKWRNIQTEWDEPGCGDKQNRVSVWEIETPESLFIFPPMTSSLKRPFQSGFPENEWGSLLRRPFIKAPENGTMDLSNSMANLYQENIMKMLYKPQVINNNGTFLPVMQQEYVPTRVPVQDMKPLQAIENPNVHLSSTESIIPNSLNMHSMLKSDEPEKLHPLAKTDKLKIESEALPDNMFDFPPFEGSSIEAANQLTYHNQNQDPSLTQTSPWPMQQPQLESSLLHPQLIDTVQPDSSIINGMLPQLDVDEWMTYSSCQHQVVNPSIPSMNQEVWDNYVKNFNLRDLSDESNNQSEICASVDVSNSVNNATMADPSTSHTIFDDFCTMKEKDFQQPQDCKVGNLSSSQDGQSQITSASLADSHAFPLRDNSGGTSSSHVDFDESSFLNNNSWKQVTAPIRTYTKVQKAGSVGRSIDVTTFKNYEELVRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00227 852 ProSiteProfiles B3 DNA-binding domain profile. 144 246 IPR003340 GO:0003677
Tsu01g00227 852 Gene3D - 742 835 - -
Tsu01g00227 852 Gene3D - 141 245 IPR015300 -
Tsu01g00227 852 SMART B3_2 144 246 IPR003340 GO:0003677
Tsu01g00227 852 Pfam AUX/IAA family 743 833 IPR033389 -
Tsu01g00227 852 Pfam B3 DNA binding domain 144 245 IPR003340 GO:0003677
Tsu01g00227 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 850 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu01g00227 852 PANTHER AUXIN RESPONSE FACTOR 5 24 850 - -
Tsu01g00227 852 CDD B3_DNA 143 244 IPR003340 GO:0003677
Tsu01g00227 852 Gene3D - 308 380 - -
Tsu01g00227 852 Pfam Auxin response factor 270 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu01g00227 852 SUPERFAMILY DNA-binding pseudobarrel domain 134 273 IPR015300 -
Tsu01g00227 852 SUPERFAMILY CAD & PB1 domains 746 825 - -
Tsu01g00227 852 ProSiteProfiles PB1 domain profile. 746 830 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00227 Tsu-Chr1 1776735 1781586 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu01g00227 AUX_IAA 3.4e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00227 01 1776735 1781586 Tsu01g00227 01 1776735 1781586 ECH