Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00213 ATGGATAGAAGATGGCCTTGGAAGAAAAAATCAACTGATAAGACTGTGCTTGAGAAAGTTGCTGCTGAATTGGATTCTGCTGGTGCTTCTATTCAGAGCAATCAGGATGTTTATAAGAAGCCGAACTATGTCCAAATCTCTGTAGAGTCATATTCACATCTGACGGGTTTGGAGGATCAAGTGAAGACATATGAAGAAAAGGTTCAGACACTTGAGGATGAGATCACTGAATTAAATGAAAAACTGTCCGCGGCAAACACAGAGATAACTACCAAGGAAGCCTTGGTAAAACAACATGCTAAAGTAGCTGAAGAGGCTGTTTCTGGCTGGGAAAAGGCAGAAGCAGAAGCTTTGGCGTTGAAGAACCATCTAGAATCTGTCACTCTTTTGAAACTTACTGCTGAGGATCAGGCATCACAGTTAGATGGTGCTCTTAAAGAGTGTATGCGACAGATACGAAACCTGAAGGAAGAACATGAGCTTAAAATACAGGATGTTGCCCTCGCAAAAACCAGGCAATTGGACAAGATTAAGGGTGATCTGGAGGCTAGGATACATAACTTTGAACAGGAACTGCTCAGGTCGGCTGCTGATAATGCGGCTTTGTCAAGGTCTTTGCAGGAGCGCTCTAACATGGTAGTCAAAATAAGTGAAGAAAAAGCTCATGCCGAGGCTGAAATTGAGCATCATAAGAGCACCATAGAATCATGCGAAAGAGAAATCAATTCACTTAAATATGAGCTTCATGTTATTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAGAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGAAGgtgttaaaaaaattgctaAATTAGAGGCAGAGTGCCAAAGGTTACGTGGTCTAGTACGGAAAAAGTTACCTGGTCCTGCTGCGCTTGCACAAATGAAGCTGGAAGTTGAAAGTCTTGGCCGAGATTATGGAGAAACTCGATTAAGGAAGTCGCCTGTCAAACCTGCTAGTTCTCATTTCTCTCCGTTGCCTGATTTCTCCCTGGAGAATATACAGAAATTCCAGAAAGATAATGAATTTCTTACTGAGCGCTTATTGACAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCAAAACGTAACAGTGAGTTGCAGGCTTCTAGGAGTATGTGTGCTAAAACACTTAGCAAACTTCAAATTTTGGAAGCGCACGGCCAGACAAGTAATCAGCAGAAGGGATCTCCAAAATCTCCCATCCATATGAACCATGAAAGCATTTACAGTCAAAATACAGGTTATGCACCAAGCATGATCTCCATATCTGAAGATGGTAACGATGACACGGGAAGTTGTGCGGAGTCATGGTCTACAGCAATAATCTCTGAGCTATCCCAAATCCCAAAAGAAAAGGATGCTAATGAATTGGGAAAATCTGAAGTGACTAAGAAGTTGGAACTGATGGATGACTTTCTAGAGGTGGAGAAATTTGCTGGATTATCAAACGACTCTAATGAAGATGCCTCAGTGACAGTTACATCAAACAATAAGACGGATGAAATCATGACCAATGATGTATCAGAAGTCAGTACCAGCAAAGATGTtccctcagagtctgaaaataAGAGTGATTTGAATGCATTGCCAAGTCAAGTGTCTTCTACTGCAGTATCACCCAGTCTCGGTGGGATTGATGGCTTATCACCGGAAGAGCTTCAATCAAGAATACTATCAGTTTTTAAGTCTACGACTAAGGATACTGATATATGTAAGATCCTGAAGgatattaaacatgttattgAAGAAGCACACGACACTTCCATCCAAGACTCTGTAGCTGTCATTACCCTTGATGTCACACCTTCCGATAGTCCGTGTGATAAAAAGGATAATCCTGAAGATGCCGGTTCAATTGCAGAAAAAGAACTAATTTCATCCCAAGAACCTACTGAATATATGCAGATAACTTCTGATATAGAAGCTGCAATATCTCAAATTCACGACTTTGTATTGTTCCTAGGTAGAGAAGCAATGACAGTTCATGATATATCTTCTGATGGAGATGGGATAAGCCAAAAGATGGAGGAGTTCTCTGTTACTTATAATAAAGTTAAATGCAATGAAGAAAGTTTGCCACAATTTGTTCTTGATCTGTCTCATGTCTTGACTAAAACAAGTGAATTCAGATTTAATATCCTTGGTTACAAGGGTATGGAAACTGAATCTAACAGTCCTGATTGCATAGATAAAATTGCTCTGCCAGAAAATAAGTTGGTTCAAGACAACTCTTCCGGAGAGAGATATCAAAATGGTCATTCCCATATTATCAATCCTTGTTCTAATCCCGAGGTTCCTGATGATGGAAATTTGACCTCGAGCTATGAATCAAATGTCACATCACAAAAGTTCTCCATGGAGGACTTTGAGGAATTGAAATTAGAGAAAGAGAAGGCAATCGTGGATCTGTCGAAATGTTCTGAAAATCTTGAAATGACAAAGTCTCAGTTACAAGAGACCGAACAACTTCTAGCTGAAGTTAAATCACAATTAGCTTCTGCTCAAAGGTCAAACAGCTTGGGCGAGACTCAACTTAAATGCATGGCAGAGTCATACAGATCACTTGAAACACGTGCACAGGAGTTTGAAACTGAGCTCACCCATCTGCGGATGAAGACAGAATCTCTTGAGAATGAACTTAAAGATGAAAAGAGATCTCATGAAGCAGCTTTGGCGAAGTGCAAGGAGTTAGAAGAACAATTGCAAAGGAATGAGAGCTCAGCTGCTGATAATGAGCTTAAGACTAAAAAGGAGAGAGACTTGGCTTCTGCTGCTGAAAAGCTAGCTGAGTGTCAGGAAACCATATATCTTCTTGGTAAGCAGCTAAAAGCTATGCATCCTCCAACAGAACCGATGGGATCTATGCATAGTGAAAGGCTTTCAAAGGTTGAAGGCTTCGCAGAGCGTGAACTTCAGAGCCCAAATTTGCATGATCTAGATCAGGTGGAGATGGACGGTGCTAGTTTTGCTTTTATGCAAAGACAGGGTGCAGAGTCCCCTTTGCATTTTACCAACAGTTTATATAGTCCATCAGATAATGACTCAAACTTTCAAGCCATATCTCCTGTACATCATCCAATTCACAAGCCAACAAAGTCAACCTCTTCATCAGCTTCGTCAACTCCTACACCAGAGAAACATGCCCGAGGTTTTAGTAGATTCTTTTCATCAAAAGGAAAATCCGGTCATTGA 3246 0.4014 MDRRWPWKKKSTDKTVLEKVAAELDSAGASIQSNQDVYKKPNYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEITELNEKLSAANTEITTKEALVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLLKLTAEDQASQLDGALKECMRQIRNLKEEHELKIQDVALAKTRQLDKIKGDLEARIHNFEQELLRSAADNAALSRSLQERSNMVVKISEEKAHAEAEIEHHKSTIESCEREINSLKYELHVISKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGETRLRKSPVKPASSHFSPLPDFSLENIQKFQKDNEFLTERLLTMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQILEAHGQTSNQQKGSPKSPIHMNHESIYSQNTGYAPSMISISEDGNDDTGSCAESWSTAIISELSQIPKEKDANELGKSEVTKKLELMDDFLEVEKFAGLSNDSNEDASVTVTSNNKTDEIMTNDVSEVSTSKDVPSESENKSDLNALPSQVSSTAVSPSLGGIDGLSPEELQSRILSVFKSTTKDTDICKILKDIKHVIEEAHDTSIQDSVAVITLDVTPSDSPCDKKDNPEDAGSIAEKELISSQEPTEYMQITSDIEAAISQIHDFVLFLGREAMTVHDISSDGDGISQKMEEFSVTYNKVKCNEESLPQFVLDLSHVLTKTSEFRFNILGYKGMETESNSPDCIDKIALPENKLVQDNSSGERYQNGHSHIINPCSNPEVPDDGNLTSSYESNVTSQKFSMEDFEELKLEKEKAIVDLSKCSENLEMTKSQLQETEQLLAEVKSQLASAQRSNSLGETQLKCMAESYRSLETRAQEFETELTHLRMKTESLENELKDEKRSHEAALAKCKELEEQLQRNESSAADNELKTKKERDLASAAEKLAECQETIYLLGKQLKAMHPPTEPMGSMHSERLSKVEGFAERELQSPNLHDLDQVEMDGASFAFMQRQGAESPLHFTNSLYSPSDNDSNFQAISPVHHPIHKPTKSTSSSASSTPTPEKHARGFSRFFSSKGKSGH 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00213 1081 MobiDBLite consensus disorder prediction 502 567 - -
Tsu01g00213 1081 MobiDBLite consensus disorder prediction 502 533 - -
Tsu01g00213 1081 MobiDBLite consensus disorder prediction 540 560 - -
Tsu01g00213 1081 Coils Coil 349 376 - -
Tsu01g00213 1081 Coils Coil 138 165 - -
Tsu01g00213 1081 Coils Coil 54 95 - -
Tsu01g00213 1081 MobiDBLite consensus disorder prediction 1032 1081 - -
Tsu01g00213 1081 Coils Coil 863 952 - -
Tsu01g00213 1081 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1081 - -
Tsu01g00213 1081 MobiDBLite consensus disorder prediction 1046 1064 - -
Tsu01g00213 1081 Coils Coil 821 855 - -
Tsu01g00213 1081 SUPERFAMILY Tropomyosin 820 962 - -
Tsu01g00213 1081 Coils Coil 220 289 - -
Tsu01g00213 1081 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1081 - -
Tsu01g00213 1081 Pfam Filament-like plant protein, long coiled-coil 92 969 IPR008587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00213 Tsu-Chr1 1642603 1647889 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00213 01 1642603 1647889 Tsu01g00213 01 1642603 1647889 ECH
Tsu01g00213 01 1642603 1647889 Tsu07g00275 07 2103278 2108417 PCT