Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00212 ATGGCTGTTTTATCAATTGCACTTCAGTACTATGTTCATCTTAGGCTGAACAATGACCCTGGTTGGAAAAATATCAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTTCAAAGAAATCTTGAAGGATATGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGACTTGATTATGTTGGGTCTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGTCAAGACAAATGCTTCGTTTGTGGTCAAATGGGTCATATGGCTGCAGAATGTCAAGGAAAGGCTAAAAGGAAGACAGGAGAATTTGATGAAAAGGGAGATGCTATTGTTGTTAAAAAGCCTTTCCAGTTTCTGAACATTTGGACGCTGAGGGAATATCTGGAGTTTGAGATGAGAATACCTAATGCTCCTTTTGAGATTGATTTTGAAAGCATATTGGATGATTTTATCTTCATATGCTTTTTTGTTGGGAATGATTTCCTACCACATATGCCTACGCTAGAGATTCGTGAGGGTGCAATTAACTTGCTCATGGCAGTTTACAAAAAGGAGTTAAAGGAAATGGGTGGATATTTGACGAATGGTAGTAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAGGCTGTTGGATCATACGAAGATAGCATATTCCAGAAAAGAGCTAGACAGGAACAGCGAACCGTGGAAAGAATTAAGCGTCAGAAGTCACAAGCAAGAAGAGGAGATGATGTTGGGCCTCAAGTTCAACCGGAGTCTCTAGTTCCAGTTGCACAATTCCGCGGTTCTCGTCTTGCTTCAGCTCCAGCAGCTTCACCGTTTCAACAATCTGGGTCCACCTCAGTTAGAAAAGGCAATAAAGAAGTCCATGAGAGGCCCAGTAAAGTTTCTAGGTTATCTTCAGGAGCAACTGTTGCTGCTGCAATTGTTGAAGCTGAGAATAGTCTTGAAATAGATGCTGAAGATAACAAAGAGGACTTGAAAATAAAGCTGAAGGGGATACTTCGTGACAAATCTGATATGTTCAACTCAAAAGGTGGTCATGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAggtattatgaagaaaaattttcTGCTCAAACTCCTGAAGAACTTGACGCTATACGGAAAGATGTTGTCTTGAAATACACTGAGGGTCTATGCTGGGTGATGCATTATTATTACGAAGGCGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCATCTGATCTCAAGGACCTTGGTCAGCTCAATATTAACTTTGAGTTGGGTACACCGTTCAAACCATTTGATCAGCTTCTTGGAGTTTTTCCTGCTGCAAGCTCTCATGCTCTGCCTGAGCCGTATAGGAAACTAATGACTGATCCCAACTCGCCAATAATTGACTTTTATCCAATAGATTTTGATGTGGACATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGCCCGTCTCCTTCAGGAAGTGCGGAAAATAGAAGACTTGTTAACGccaGAGGAAAAGCGACGTAATGCAATAATGTTCGAGATGCTTTTTGTAAATTCATGTCATCCTCTCTCTGCGTGCATTAGTACCCTCGACAACAAATGTAGAAACATGTCCAACTCTGAACGTGCTGATGTCAAGGAAAAAATTGATCCCAATGAAAGTGGTGGAATGAATGGTTACTTATCCTTATGTGGCGGAGAACCTTGCCCTCCCATCTTCAGGTCCCCTATTGCAGGCATGGAAGACATTATGGATAATCATGTCATATGTGCAATATATAGACTTCCAGATGCACATGAACATATAACCCGACCTCCACATGGAGTTAAATTTCCAAAGAAGATTGTGACTATCGGGGATCTAAAACCTGAACCTGTTCTATGGCATGAAGATAATGGTAGGAGATATAACGAAAGTGGAAGgAGAAACCCGCCAGGAGCTATATCTGGTCGGGAGCTTGGAGATGCAGCACACAGACTTGTTGCCAATTCCCTACAGGTCAGGACGGACTCAAATAGATACCAGCATCCTAATGGGTCAACAATGCCCTATAATGGACCAAGGGGTCATAGACAATCACACCATGGCCATAACTATGGATCACACCCTGGCCAAAATTATGGATCACGCCCTGGCTATAACTATGACTCACGCCCTGGCTATGCCGCAATGCCACCGCCTTTATCCGCTGCCCCTCCTGTGCCTTATGTACCTTATGCAGCTGCCCCTCCAGTGCCATATGGTTATAACCAACCATACTCTCCACCAGTGGTCTCTCCACCAGTGGTGCATAGTCCTCATCAACACCAATCAAATTCTTTTCCAAGAGGTGACCATCAAAACCCTAGATCACAACATTATGAAAGAAATAACCAAGTTAACGGCGGAAATGCAAGGCATTTCTCAGGAAATAATCAGAATCCTCGTTTTACAAATACACAAGGTTCATTTGCCCGTCAAAGTCACCATGCCGCTGGTCGCCACAGCCAAAACGTCCGACCATTTAGAGGTTCTACCCAATGGACTTCTCCAGGAGGTAACCCTGGTGGGTATAGGGAATATGGTCAACATTCGGCCAATCATTATTCATTATTAGATAGAGGAGCAAGCCGGAAGCCAAGGCCTCCACCTAATCATAATCGCAAATAA 2745 0.4259 MAVLSIALQYYVHLRLNNDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLGLATHEIHFSILREVVFTPGQDKCFVCGQMGHMAAECQGKAKRKTGEFDEKGDAIVVKKPFQFLNIWTLREYLEFEMRIPNAPFEIDFESILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKELKEMGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFQKRARQEQRTVERIKRQKSQARRGDDVGPQVQPESLVPVAQFRGSRLASAPAASPFQQSGSTSVRKGNKEVHERPSKVSRLSSGATVAAAIVEAENSLEIDAEDNKEDLKIKLKGILRDKSDMFNSKGGHEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPIDFDVDMNGKRYAWQGIAKLPFIDEARLLQEVRKIEDLLTPEEKRRNAIMFEMLFVNSCHPLSACISTLDNKCRNMSNSERADVKEKIDPNESGGMNGYLSLCGGEPCPPIFRSPIAGMEDIMDNHVICAIYRLPDAHEHITRPPHGVKFPKKIVTIGDLKPEPVLWHEDNGRRYNESGRRNPPGAISGRELGDAAHRLVANSLQVRTDSNRYQHPNGSTMPYNGPRGHRQSHHGHNYGSHPGQNYGSRPGYNYDSRPGYAAMPPPLSAAPPVPYVPYAAAPPVPYGYNQPYSPPVVSPPVVHSPHQHQSNSFPRGDHQNPRSQHYERNNQVNGGNARHFSGNNQNPRFTNTQGSFARQSHHAAGRHSQNVRPFRGSTQWTSPGGNPGGYREYGQHSANHYSLLDRGASRKPRPPPNHNRK 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00212 914 MobiDBLite consensus disorder prediction 243 260 - -
Tsu01g00212 914 Gene3D - 439 542 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 699 719 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 663 683 - -
Tsu01g00212 914 SUPERFAMILY Retrovirus zinc finger-like domains 92 117 IPR036875 GO:0003676|GO:0008270
Tsu01g00212 914 PANTHER 5'->3' EXORIBONUCLEASE 1 746 IPR027073 -
Tsu01g00212 914 ProSiteProfiles Zinc finger CCHC-type profile. 96 110 IPR001878 GO:0003676|GO:0008270
Tsu01g00212 914 PANTHER 5'-3' EXORIBONUCLEASE 1 746 - -
Tsu01g00212 914 Pfam XRN 5'-3' exonuclease N-terminus 1 87 IPR004859 GO:0003676|GO:0004527
Tsu01g00212 914 CDD PIN_XRN1-2-like 1 146 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 288 302 - -
Tsu01g00212 914 Pfam Zinc knuckle 96 110 IPR001878 GO:0003676|GO:0008270
Tsu01g00212 914 Gene3D - 1 225 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 730 744 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 243 271 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 790 914 - -
Tsu01g00212 914 Pfam Xrn1 helical domain 159 652 IPR041412 -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 699 746 - -
Tsu01g00212 914 MobiDBLite consensus disorder prediction 285 317 - -
Tsu01g00212 914 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Tsu01g00212 914 MobiDBLite consensus disorder prediction 796 878 - -
Tsu01g00212 914 PIRSF Exonuclease_Xrn2 1 895 IPR017151 GO:0004534|GO:0005634|GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00212 Tsu-Chr1 1628712 1636901 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00212 01 1628712 1636901 Tsu01g00212 01 1628712 1636901 ECH