Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00202 atggCGGGAGAGGATAATCCGACCACAGACGCTGTTAGAACAGGAGTACTTTCGAAGAGATGGCAACATCTATGGCATAGTTGTATTACTAATCTCAACTTCACCAACATCTATTTGGAAGACCTATCCTCTGTATACAAATTCAATGAATCTCTCACCAAGATCTTGTCCGTACGCATGGCTGAACACAATCCCATCACCAGTTTCTACCTCGACATTCTATATGCTGCTCGCCCTACTGATATCATCATTGGTAACATTCCCAGACTAAATACATGGCTCAAATTTGCTGCTGACGCAAGACttaagtttcttcatcttcatctcaaTTATGTTTATGGTAATTATCCTAATCTTCGTTTATCCCCCTTGCCCAGTGGCGTCTTTCGTTGCAAAAACCTAATAGTTCTCAAGCTTCACGGGTTTTCGGTAAAACATTTTCCTTGTACGGATATAGTTGAATTTCCCGAACTCAAAACCCTTCATTTGGAAGACATTAACTTCAAAACACATTCACTGTTTACCTTGTTTCTTGCTGGATGTCCAGTTCTTGAGGATTTAAAGGTAGCTAATGTATCCTTTTTGGAGAAGGCGCATGAGGTGCCGGACCCTCTGGCCGCAAACTTAAGCAATTTGATTAGAGCAGATATTAGTAACTGTCACTTTTATTTTCCGACGATCAGAACACTTTTTAATCCAGAGTTTCTAAGGATACAACTATCGCGGCAGATGTATGCTCATGATGGTTTTCCCACCTTCCATAATTTAACTCATTTGGTGGTCAATAATATTTCGGATTTGGTAGTAAAAATGCTCCACCACTGTCCTAAACTTCAAAATCTCGACCTTTATCAGgtTCGAGATTTAGGCTCACAAGGAGAAATGTGGTGTTCATTATCATCTAGTCATGATCCTGAGAATCTTGCACATGGAGCTAGTAATAGTAATGGTCATGGAATTAGACAATTAGTAATGGACATGAAGTCAGTGGACTGTTCACAGAGCTGCATACTCTTCATTTTAGTCTTTATCAATGAAGAATGTTCAAAAGTTCATGATCCTTCAAAACCAAATAACAACAATGGTTACTCAAAATTGGGTTCATCTTGTAGCTCAATTTGTAGCTTCAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCATAGGTCTGATAATTCATCGCCAGAAAGTAGCATCTTGGGTCAAGAAACGAGTTTGCTCAAAAGAAAACCTGTTACtgcttcatcatcatcatcaacatcaactCGCTCTGCATCATGTTCTGGGAAATCATCCAACGGTGGTAGAAACTACAcgtcatcatcttcttcatcaagaGGAATGCAGTTTAGGAAGCTCTCTGGATGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTACCAATTCCTAGGAGCACAGTGTGTGCTTGTGATCAATGTGGAGAGGTCTTCCCTAAGATTGAAAGCTTAGAGCTTCATCAAGCTGTTCGTCATGCTgTTTCGGAGCTGGGTCCAGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAGTCAAGTTGGTTAAAAAGGGAATCTCCAATGTGTAAGATCGAACGGATATTAAAAGTCCACAACACCCAACGCACAATCCAACGGTTCGAAGAATGCAGAGATTCCGTAAAATCCCGTGCAGCCTCCACCACCAAGAAAAACCCCCGCTGTGCCGCAGACGGCAATGAACTTCTCCGATTCCACAGCACAACCTTATCCTGCCCACTCGGTGCACGTGGTTCCTCCGCCTTATGCGCCGCCTTACCAGGCTGCGGTGTCTGCACCATTATCCGGCACGGTTTTCAAAACAAAGGTGGAGTGAAGACCAATGCTAGCAGTGGTATGGCTCACGACAATTCGGTTGGAAGGATCGGAGAAGATTCTAGAAGAGCGATGCTTGTGTGCCGTGTGATTGCCGGAAAAGTGAAGCGTGTGGCGGAGGAAGGAGCGGCGCCGGTGACATCGGAGGAGGAGAATGTGGCGTTTGATTCAGTTGCGGGAAATGCGGGAATGTACTCGAATCTCGAGGATCTAACCGTTTTCAATCCAAAGGCTATTCTTCCTTGTTTCGTAGTTATTTACAAGGTGCTTTCATAG 2133 0.4173 MAGEDNPTTDAVRTGVLSKRWQHLWHSCITNLNFTNIYLEDLSSVYKFNESLTKILSVRMAEHNPITSFYLDILYAARPTDIIIGNIPRLNTWLKFAADARLKFLHLHLNYVYGNYPNLRLSPLPSGVFRCKNLIVLKLHGFSVKHFPCTDIVEFPELKTLHLEDINFKTHSLFTLFLAGCPVLEDLKVANVSFLEKAHEVPDPLAANLSNLIRADISNCHFYFPTIRTLFNPEFLRIQLSRQMYAHDGFPTFHNLTHLVVNNISDLVVKMLHHCPKLQNLDLYQVRDLGSQGEMWCSLSSSHDPENLAHGASNSNGHGIRQLVMDMKSVDCSQSCILFILVFINEECSKVHDPSKPNNNNGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVTASSSSSTSTRSASCSGKSSNGGRNYTSSSSSSRGMQFRKLSGCYECHMIVDPSRLPIPRSTVCACDQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRESPMCKIERILKVHNTQRTIQRFEECRDSVKSRAASTTKKNPRCAADGNELLRFHSTTLSCPLGARGSSALCAALPGCGVCTIIRHGFQNKGGVKTNASSGMAHDNSVGRIGEDSRRAMLVCRVIAGKVKRVAEEGAAPVTSEEENVAFDSVAGNAGMYSNLEDLTVFNPKAILPCFVVIYKVLS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00202 710 ProSiteProfiles Zinc finger C2H2 type domain profile. 476 504 IPR013087 -
Tsu01g00202 710 Gene3D Ribonuclease Inhibitor 98 332 IPR032675 -
Tsu01g00202 710 SUPERFAMILY ADP-ribosylation 501 707 - -
Tsu01g00202 710 MobiDBLite consensus disorder prediction 386 447 - -
Tsu01g00202 710 ProSitePatterns Zinc finger C2H2 type domain signature. 476 499 IPR013087 -
Tsu01g00202 710 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 345 709 - -
Tsu01g00202 710 Gene3D - 500 708 - -
Tsu01g00202 710 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 345 709 - -
Tsu01g00202 710 SUPERFAMILY RNI-like 95 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00202 Tsu-Chr1 1563651 1573147 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g00202 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00202 01 1563651 1573147 Tsu01g00202 01 1563651 1573147 ECH