Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00187 ATGGGTATTTTAAGTACTATTACTGGTTTTTTGGGATTAGGAATTGGAACTTCACTTGGACTAGTCATTGGATACTATTTGTTTATCTATTTCCAATCAACAGATGTCAAGGATCCTACAATTCGTCCTTTGGTCGAGCTAGATGCAAAACTTCTGCAACAGTTACTTCCAGAGATACCCTTTTGGATAAAAAATCCAGACTATGATCGTCTTGACTGGCTTAATAAATTTGTTGAGTCTATGTGGCCTTACTTGAACAAGGCAATATGCAAGACTGCAAGAACTATTGCAAAGCCAATTATTGCTGAACAAATTCCAAAGTACAAAATTGATTCAGTTGAGTTTGAAGAACTTAACTTGGGTTCTCTACCACCAACTTTTCAAGGAATGAAAGTGTATAGCACTGATGAAAAGGAATTGATTATGGAACTATCAGTGAAATGGGCTGGTAATCCTAACATTATAGTTGCAGTTAAAGCATTTGGATTGCGCGCCACGGTTCAGGTTGTTGATTTGCAAGTATTTGCTTCTCCACGCATAACGTTGAAGCCTTTGGTTCCAAGTTTTCCATGTTTCGCCAATATTTACGTGTCTCTCATGGAGAAGCCACATGTCGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGGCTATTCCTGGTCTTTACAGGATTGTCCAGGAAATTATAAAAGAACAAGTTGCAAAAATGTATTTGTGGCCTAAAGCCTTAGAAGTGCAAATAATGGATCCATCAAAGGCCATGAAAGCGCCTGTTGGAATTCTTCATGTGAAGGTTGTGAGAGCATTGAAGCTTAAAAAGAAAGATATAATGGGAGGAGCAGACCCTTATGTGAAACTTAAACTCAAAGATGATAAACTTGGTTCAAAGAAAACAACTGTGAAATACAAGAACTTGAATCCAGAATGGAATGAAGAATTTAATGTGGTCATTAAAGATCCAGAATCTCAAGCCTTAATGCTTAATGTTTATGACTGGGAGCAGATTGGAAAGCATGATAAGATGGGTATGAATGTAATTCCATTGAAAGATCTTACACCAAATGAACCAAAAGAACTTACTCTTAAGTTACTCAAGACACTTGAACCTGATAATCCCGAGAATGAAAAGCCGCGTGGAGAGCTCGTTGTGGAAGTTATGTACAAACCTTTTACGGAAGATGAGTTACCTAAGAATCCAGAAGACACCAATGGAGTAGCAAAGGCTCCTGAAGGAACACCTGCTACTGGTGGTTTGCTTGTTATTATCATTCATGAAGCTGAAGAGGTTGAAGGAAAACACCACACGAATCCGTATGCGCGGCTCATATTTAaaggagaggaaaaaaaaaccaagCATGTAAGGAAAAATAGAGATCCAAGATGGGGTGAAACGTTTCAATTTACACTAGATGAACCCCCCACTAAGGAGAGGCTTTATGTTGAAGTCCAGAGTGCCTCCTCAAAGTTTGGCCTACTGCATCCTAAGGAAAATCTTGGATATGTGGAGATAAATTTATCTGATGTTGTTAGCAACAAAAGAATCAATGAGAAGTATCATCTTATTGACTCTAAAAATGGAAAGATTCAAATTGAGCTTCAATGGAGAACTCcctaa 1617 0.3754 MGILSTITGFLGLGIGTSLGLVIGYYLFIYFQSTDVKDPTIRPLVELDAKLLQQLLPEIPFWIKNPDYDRLDWLNKFVESMWPYLNKAICKTARTIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYSTDEKELIMELSVKWAGNPNIIVAVKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMAIPGLYRIVQEIIKEQVAKMYLWPKALEVQIMDPSKAMKAPVGILHVKVVRALKLKKKDIMGGADPYVKLKLKDDKLGSKKTTVKYKNLNPEWNEEFNVVIKDPESQALMLNVYDWEQIGKHDKMGMNVIPLKDLTPNEPKELTLKLLKTLEPDNPENEKPRGELVVEVMYKPFTEDELPKNPEDTNGVAKAPEGTPATGGLLVIIIHEAEEVEGKHHTNPYARLIFKGEEKKTKHVRKNRDPRWGETFQFTLDEPPTKERLYVEVQSASSKFGLLHPKENLGYVEINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00187 538 Pfam C2 domain 419 521 IPR000008 -
Tsu01g00187 538 Pfam C2 domain 260 363 IPR000008 -
Tsu01g00187 538 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Tsu01g00187 538 PRINTS C2 domain signature 304 317 IPR000008 -
Tsu01g00187 538 PRINTS C2 domain signature 277 289 IPR000008 -
Tsu01g00187 538 PRINTS C2 domain signature 326 334 IPR000008 -
Tsu01g00187 538 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
Tsu01g00187 538 CDD C2 262 352 - -
Tsu01g00187 538 Gene3D C2 domain 256 411 IPR035892 -
Tsu01g00187 538 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Tsu01g00187 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 392 IPR035892 -
Tsu01g00187 538 SMART C2_3c 261 361 IPR000008 -
Tsu01g00187 538 SMART C2_3c 419 518 IPR000008 -
Tsu01g00187 538 ProSiteProfiles C2 domain profile. 399 519 IPR000008 -
Tsu01g00187 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Tsu01g00187 538 Gene3D C2 domain 419 537 IPR035892 -
Tsu01g00187 538 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Tsu01g00187 538 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00187 Tsu-Chr1 1442686 1447700 Transposed