Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g00169 | atgttgttggatgcaATCCTTATGGCACTCTTCTTGCCGTGTCTTGGGATGGCAGCCATCTTTATAATCTACATGTGTCTTCTCTGGTACGCCACTACTCACCCCACTTCTGCCGCCATCATTCTCAAGCCTGTCATCAATACAGGCCTTTCCCCTTCGGAACTACAAAAGATACCCTGTATCGTCGGGAAAGAACTTGTGGCCGGTCCGGAATGTGCAGTTTGTCTGGATGACATAGGTGAAGAAGAATCAGCACGTGTGATTCCAGGTTGCAATCATTCATTTCATAAGGAATGTGCTGATACATGGCTTTCTAAACATCCAGTCTGCCCTGTTTGTAGAGCTAAGCTCGATCTTGATCCTAACGCTTCCTCTCAAAATCCATGCTAA | 390 | 0.4462 | MLLDAILMALFLPCLGMAAIFIIYMCLLWYATTHPTSAAIILKPVINTGLSPSELQKIPCIVGKELVAGPECAVCLDDIGEEESARVIPGCNHSFHKECADTWLSKHPVCPVCRAKLDLDPNASSQNPC | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00169 | 129 | Pfam | Ring finger domain | 71 | 114 | IPR001841 | - | |
| Tsu01g00169 | 129 | SUPERFAMILY | RING/U-box | 71 | 121 | - | - | |
| Tsu01g00169 | 129 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 114 | IPR001841 | - | |
| Tsu01g00169 | 129 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 3 | 129 | - | - | |
| Tsu01g00169 | 129 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL23 | 3 | 129 | - | - | |
| Tsu01g00169 | 129 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 127 | IPR013083 | - | |
| Tsu01g00169 | 129 | SMART | ring_2 | 72 | 113 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g00169 | Tsu-Chr1 | 1319115 | 1319504 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu01g00169 | 01 | 1319115 | 1319504 | Tsu01g00169 | 01 | 1319115 | 1319504 | ECH | |
| Tsu01g00169 | 01 | 1319115 | 1319504 | Tsu07g00237 | 07 | 1784636 | 1785520 | PCT |