Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00153 ATGTTTCCCTCCTCCGCAAAAAGCCCTAACCCTAAAAATGTGTACCACATCGGAGGTCTGGCGGTCGAATTTCCTTACCAACCGTACGGGTCGCAGTTTGCGTTTATGGGCCGAGTAATCTCAACCCTTAACCGAGCTCAGAAAGAAGGTCACTGTCACGCGTTGCTCGAGTCTCCAACTGGTACCGGCAAATCCCTTTCGCTTCTTTGTTCCACTCTCGCTTGGCAGCAAAATTACAAACCATCCACTCCGGACCCAATCGCCGATCCTCTCGCCAATGGTGGAGGTTTTCTTCCCGACGAGGTTTCACCTTCTTCCGCATCAGAAAATCCAGAATCAGAAGCCCCCAACAAGAAGCAGAAGAAAAAGGCAGTTCCAACTATTTATTATGCTTCGAGAACACACTCACAAATTTCTCAATTGGTTCGTGAATTGCGGAAAACATCCTACAGGGTGCCAATGGCTCTGTTGGCATCACGAAAACATTACTGcaccaataaaaatatatgtggcACTGAAAACATTGACGAAGAATGTAAATTACTTTTGAAAGATAAGGAATTAGGCTGTTCAGAATTCAAAAATGCGCATAAAGTCAAAAGTCACCCATCCCTCCAGAAAGGAGGATGCAATGAGGTGCACGACATAGAAGATCTTGTAAAAGTCGGACAATCGGTGAGAGGTTGCTCTTATTATGCTGCCCGTTCTATGTCAGATGATGCACAGTTGGTATTTTGTCCATATAACTACATCATTAATCCAGTCATCCGGGGAGCAATGGACGTGGATATTAAAGGAGCCATTGTGATATTTGATGAAGCTCATAATATAGAGGACATTAGTCGTGATGCTGGTAGTGTGGATATTGAAGAGGATATATTAGACAAACTACAAATGGAGCTCCAGCAACTCCTTCATTCAGATACTGCAATTTACCAACCCTTATATGAAATGACACAGGGCCTCACTAGTTGGATGGAACAGAAGAAAACTAAACTAGAAAAACGTGACTTTCAGCACTATGTGTCATGTTGGACAGGTGATAAGGCTTTACAAGAGCTTGAAGAAGCAAATATTTCAAAACAGTGCTTCCCTATCTTGCTAGAATGTGCTACTAAGGCAATCAAAGTTGCTACAGACTTGGAAACGGATGCACCGCGTTTAAGTGGCATGTCAGTGATAACATTGGAAGGTTTATTCTTATCACTATCTTATTTCTTTGCTAAAAATGGATCTCACATGTTGGATTACCAGCTTGCTCTTCACCGAACTGTTAGAAAACATGAGAGAAGAGCTTTTGGAAACTGGACACATACTTTAAGTCTGTGGTGCTTGAATCCAGAAGTTGTATTTAGAGATGTTGCCGATCTTTCGTTATCAGTCATATTGACTTCTGGGACACTGTCACCGATGACATCATTTTCTTCTGAACTTGGAGTTAAGTTTGAAGCTAGTCTTGAAGCTCCACATGTAATTGATATTGATTCACAGGTGTTGCCTGCTATAATCCCCACCGGTCCTGGTAATATTCCTTTGAATGCAAGTTACAAAACTGCTGATGGATATGCATTCCAGGATGCAGTTGGAAGATCTTTAGAGGAAATCTTCAAGATTGTTTCAGGTGGATGTCTTGTGTTCTTTCCAAGTTATAAATTGATGGAAAAATTATGCACCCGATGGTCTGAAACAGGTCAATGGTCTCGACTCAATGAAGAAAAGTCACTTTTTGTTGAACCAAAGGGGGGTAGCCAAGATGATTTTGAACTTACATTGAAGGGTTATTATGACTCAATTCATCATGGCAAAAGACCTGCTTCTGGAAGGAAAAGAAGGATTAAGAAAACTGATCTAAATCACTTCCATGCAGTTGATTCCCTACAGGATTCTAAGAAAGGAGGAGCCGCTTTACTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTCTCTGATGACAATGCCAGAGTAGTTATTATTGTTGGTATCCCATTTCCAAACATAAATGATATTCAAGTTGCACTGAAGAAAAAGTATAATGACACATTCAAGTCATCTAAACATCTCTTAGGCGGAAATGAGTGGTACTGCCACCAAGCATTCCGAGCTTTAAATCAAGCGGCAGGGCGGTGTATACGGCATAGACTTGATTATGGAGCAATCATCCTATTGGATGAGCGCTTTTGTGAAGAAAGGAATAGAGCATTTATTTCAAAGTGGTTAAGAAGACCCTTGAAAGTGTATGACAATTTTGACGTGTCCCTGGAGGGACTAAAATCATTCTTTGAGAATGCGAAGGAGAGGTATGGCGTGAATACAGTCCACCCCACAAAGAATTTGGAATTAAATGGTGATGGTGGTGTTCAAAACAAGGATGGAATTATGAACTttacaaagaagaaaaatcagaaactgAACAAGTCTAGAAATGGAAGTAATAAAGAAACATCAGTTATTGAGGATAACATCTCTATTCCCATATCGAGCTCTCACAATCTTGCTGAAAGTCAGCCACCAGCTCAAAGGAATAGTAATACATACAATTTCAAAGACCATATTAACCTAGAATGCTGTAATCTGACAGAAAGGTTTCCTGGGGAATCGTCTGTGCCATTTACACATGATGAAACCTCCATTGTCAAGGAAAGCCCATGTTTAGATATTGGCAGTGATGCTGGCAGCCCCGATTACTCTAAGGATGACAATTCTGATTCCACCATAATTGAGGCTTCTGCTCGATTTGCAATGGATCGCTTCTCAAGTTTTCCAGTGTCTTCAACTACTGGAAGTAAAGTATCAATAACAGTCACTCCTGAAAAGAGTGTAAGTGCAAATAATATTCCAGAAACAGAATCATCTTTGAATTTGAGTGTTAATTCTCACAATCAGAAAAGAAGAAAGCCCATGGTCATACCATTTATAAACCTcattgaagaagaaaacaatGATGCATCTTGTGTCAGCACTCCTACATGGTACACAAAAAGCTCATTGGAAGTTAGAGAGGCAACTCATAGAACTGAATGTAGTTATgggaaaattttaaattcacaATCTCCTCAGTTACCAACAAGCAATATACCTGGTTCATGTTCTGTCCCTCTACTAGACAAAAGGTTACAGCTATTTTGTTCACTCTGCAAAAACCCATTGGGACGACACGAGAACCATCTATATCTTACATGCTCTTTGATTTCATCATCAAAAGTTCACTTGAGATTGCTTTTGGAAAAGAGACTGGAAACTTACACTGCGGATACAGAAAAGAGTGTACCAGTTATTGTTACtgatttttcatttgttgatcAACGTATTTGCAGTAGAATACCCAAAAGTACACAGGAACAGGGTATATGGTGTCCAGAAGATGGGTGTGTATTCAGTACAATTTTTTGTCCCTTCTGCAGTAATACCAACAATTTGCTTGGAGTTCAGATCATGGCAACCAATTCATCAAATGTTCAGTTACTTGACAAGatattgtttttctttgattcTTTGGAAGTGAAAAACCAGGAGGAAACAGGAAAACGTGCCTCAGAGGAAGGCGGTTTTTTGCTGAGTATCGATTCTCGCATGGATGGAGTTGCTGCCTTAAATTCCTTTGAGAAATATTGTTATGTTCCCCAACCAGGGAAATCAGAAGTCCGGAGGTCTAGAAAATCAAAgCCAAGACTAAGAGGCTAA 3687 0.3925 MFPSSAKSPNPKNVYHIGGLAVEFPYQPYGSQFAFMGRVISTLNRAQKEGHCHALLESPTGTGKSLSLLCSTLAWQQNYKPSTPDPIADPLANGGGFLPDEVSPSSASENPESEAPNKKQKKKAVPTIYYASRTHSQISQLVRELRKTSYRVPMALLASRKHYCTNKNICGTENIDEECKLLLKDKELGCSEFKNAHKVKSHPSLQKGGCNEVHDIEDLVKVGQSVRGCSYYAARSMSDDAQLVFCPYNYIINPVIRGAMDVDIKGAIVIFDEAHNIEDISRDAGSVDIEEDILDKLQMELQQLLHSDTAIYQPLYEMTQGLTSWMEQKKTKLEKRDFQHYVSCWTGDKALQELEEANISKQCFPILLECATKAIKVATDLETDAPRLSGMSVITLEGLFLSLSYFFAKNGSHMLDYQLALHRTVRKHERRAFGNWTHTLSLWCLNPEVVFRDVADLSLSVILTSGTLSPMTSFSSELGVKFEASLEAPHVIDIDSQVLPAIIPTGPGNIPLNASYKTADGYAFQDAVGRSLEEIFKIVSGGCLVFFPSYKLMEKLCTRWSETGQWSRLNEEKSLFVEPKGGSQDDFELTLKGYYDSIHHGKRPASGRKRRIKKTDLNHFHAVDSLQDSKKGGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKYNDTFKSSKHLLGGNEWYCHQAFRALNQAAGRCIRHRLDYGAIILLDERFCEERNRAFISKWLRRPLKVYDNFDVSLEGLKSFFENAKERYGVNTVHPTKNLELNGDGGVQNKDGIMNFTKKKNQKLNKSRNGSNKETSVIEDNISIPISSSHNLAESQPPAQRNSNTYNFKDHINLECCNLTERFPGESSVPFTHDETSIVKESPCLDIGSDAGSPDYSKDDNSDSTIIEASARFAMDRFSSFPVSSTTGSKVSITVTPEKSVSANNIPETESSLNLSVNSHNQKRRKPMVIPFINLIEEENNDASCVSTPTWYTKSSLEVREATHRTECSYGKILNSQSPQLPTSNIPGSCSVPLLDKRLQLFCSLCKNPLGRHENHLYLTCSLISSSKVHLRLLLEKRLETYTADTEKSVPVIVTDFSFVDQRICSRIPKSTQEQGIWCPEDGCVFSTIFCPFCSNTNNLLGVQIMATNSSNVQLLDKILFFFDSLEVKNQEETGKRASEEGGFLLSIDSRMDGVAALNSFEKYCYVPQPGKSEVRRSRKSKPRLRG 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00153 1228 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 10 1108 IPR045028 -
Tsu01g00153 1228 Coils Coil 287 307 - -
Tsu01g00153 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 18 333 IPR014013 GO:0005524
Tsu01g00153 1228 Pfam DEAD_2 130 292 IPR010614 GO:0003677|GO:0003678|GO:0005524
Tsu01g00153 1228 MobiDBLite consensus disorder prediction 84 125 - -
Tsu01g00153 1228 Gene3D - 509 754 IPR027417 -
Tsu01g00153 1228 ProSitePatterns Glutaredoxin active site. 1126 1142 IPR011767 -
Tsu01g00153 1228 PANTHER FANCONI ANEMIA GROUP J PROTEIN 10 1108 - -
Tsu01g00153 1228 SMART deadxpd 20 309 IPR006554 GO:0003678|GO:0016818
Tsu01g00153 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 724 IPR027417 -
Tsu01g00153 1228 Pfam Helicase C-terminal domain 532 742 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Tsu01g00153 1228 Gene3D - 28 335 IPR027417 -
Tsu01g00153 1228 SMART Cxpdneu3 550 730 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Tsu01g00153 1228 CDD SF2_C_XPD 496 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00153 Tsu-Chr1 1178546 1194394 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00153 01 1178546 1194394 Tsu01g00153 01 1178546 1194394 ECH