Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03492 ATGCTTCCTCCTTTAAGGAGATTCTATGGGTTTGAGAGCTGGATAGATAAAGATTCAGAAAAAATCAACGGTGAGAAATCAAAATCGGAGAGGAAATCGAAAGAAGCATGCAAGAGTCACAGAGAAGCTGAAAGGAGACGCAGACAGCGAATCAATGCTCATCTCTCCACTCTTCGCTCTCTCCTCCCTAACACCACCAAGTCAGATAAGGCATCGTTGCTAGCGGAAGTGGTGCAGCACGTGAAACGGTTAAGGAAGGAAGCTGATGATGTGGCGAACCGTCACAACGAGGAGTCGTCAGCATCGTGTAGTGGAGAACCCGGTTCGGTTGATTCTACGGAAGGAGGTGAGACATGGCCATTTCCGGGAGAATCGGATGAGGCGACGGTGAGTTATTTTGGCGAGGAGGAAGGGGAACCGAAGCGGATGAAAGTGACAGTGTGTTGTGAAGACAGGCCGGGACTGAACCGGGATCTGACTAAAGCAATTCGGTCGGTTCGAGCGATACCGGTTCGAGCAGAGATAATGACGGTTGGAGGAAGGACCAAGAGTGTTATAGTGGTGGAGTTTGATGGAAGAGAAGAAAAGGAGGTTGAAGCTTTGGAAAGGGGTTTGAAGGCGGTGATAGAGAATCGGGCTTTTGTGGATTCTAGGATGGGCCCGTTTATGTTGGGCCTGAAACGGGCTCGGGTGAGTAATTCTGAGAAATGA 711 0.4951 MLPPLRRFYGFESWIDKDSEKINGEKSKSERKSKEACKSHREAERRRRQRINAHLSTLRSLLPNTTKSDKASLLAEVVQHVKRLRKEADDVANRHNEESSASCSGEPGSVDSTEGGETWPFPGESDEATVSYFGEEEGEPKRMKVTVCCEDRPGLNRDLTKAIRSVRAIPVRAEIMTVGGRTKSVIVVEFDGREEKEVEALERGLKAVIENRAFVDSRMGPFMLGLKRARVSNSEK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03492 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 94 IPR036638 GO:0046983
Trre9g03492 236 Gene3D - 28 96 IPR036638 GO:0046983
Trre9g03492 236 SMART finulus 41 90 IPR011598 GO:0046983
Trre9g03492 236 MobiDBLite consensus disorder prediction 97 111 - -
Trre9g03492 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Trre9g03492 236 SUPERFAMILY ACT-like 141 210 IPR045865 -
Trre9g03492 236 MobiDBLite consensus disorder prediction 20 50 - -
Trre9g03492 236 Gene3D - 139 216 - -
Trre9g03492 236 Pfam Helix-loop-helix DNA-binding domain 37 84 IPR011598 GO:0046983
Trre9g03492 236 ProSiteProfiles ACT domain profile. 144 220 IPR002912 -
Trre9g03492 236 Coils Coil 74 94 - -
Trre9g03492 236 MobiDBLite consensus disorder prediction 90 127 - -
Trre9g03492 236 PANTHER TRANSCRIPTION FACTOR BHLH30 21 234 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03492 Trre-Chr9 43732085 43733125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03492 30 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.386 6.51e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g03492 HLH 8.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03492 - - psat:127118672 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03492 9 43732085 43733125 Trre9g03492 9 43732085 43733125 ECH