Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03320 ATGGCCACCGTTGCAACAAGAGGAATTGGGGTAACAAACCTCCATCATCATCATCATCCCTACAACAAAAAATCTCTTTTTCTTGGCCAAAGACTTAGATTCAAATCTTCAAACAATGAATCATCATCATCATCATCACCATCAAGATTCACTACATCACCAAAAGCTTTTCATGGTGGTGAATGGCTTAACTCAGTTCATAACCTTTTTGTTGGTGTTGGTGTTGGACTTCCATGTACTGTTATGGAGTGTGGAGATATGATTTATAGAAGCACTCTTCCTAGACCTAGTGGTTTGACAGTTACTATTCCTGGTGCTGTTCTTGCTTTTGGTGCTCTTTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGATTGTTCAGACCTACTTTTAGAAAGGATGATTTTGTTCTAGGGAAGAAGCTCGGAGAGGGATCATTTGGAGTTGTTTATAGAGTTTCACTAGCTAACAAGCCTTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAAGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACGAAGAAGACTCCTGAATATTGGCTTATATGGCGGTTCGAAGGGGATGCCACCTTAGCTGATCTATTACAGAGTAGAGAGTTTCCGTACAATGTCGAAACATTGATTCTTGGTGAGGTACAAGATTTGCCAAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATAAGGCAACTCTTGTTTGCGTTAGACGGTCTTCACTCAACTGGGATTGTGCATCGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATCAACTACATCCCTAAGGAGTTTCTTTTGGATCCAAGATATGCTGCGCCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCTGTTGCAACTGCACTCTCTCCAGTATTATGGCAGCTGAATCTTCCTGACAGATTCGACATCTACAGTACTGGTCTGATATTTCTCCAAATGGCATTTCCTAGTTTACGCACCGATAATAGCCTCATTCAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTAGAGCCTCGAAGCAGCGCTGAACTTAGGAGGGGCTTTGAGCTCTTGGATTTAGATGGCGGAATAGGATGGGAACTTCTGACATCAATGGTTCGATACAAAGCAAGGCAAAGGCTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCGATTATGCAAAATCTGCGACTTAAGTTCTTTCGAGCAACTCAGCAGGATTATAGCGAAGCTGCCAAGTGGATTATTCAGCTTATGGCTAAATCAGGAACAGAAAAGGATGGTGGATTCACTGAAGCTCAGCTCCAAGAACTTAGAGAAATTTCACCGAAGAAGAAAGCTGGTGGACAGAGAAATGCTATAGCTTCAGCTCTTAAAGTACAGAGAAAAATCATAAAAACCTTAAATGAGAGTATGGATGAGCTCAGCAGAAACAGGAAAAGCATTTGGTGGAGAAGATGGATCCCAAGAGAGGAATGA 1731 0.4136 MATVATRGIGVTNLHHHHHPYNKKSLFLGQRLRFKSSNNESSSSSSPSRFTTSPKAFHGGEWLNSVHNLFVGVGVGLPCTVMECGDMIYRSTLPRPSGLTVTIPGAVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSREFPYNVETLILGEVQDLPKGLERENRIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPSLRTDNSLIQFNRQLKRCDYDLVAWRKTVEPRSSAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYSEAAKWIIQLMAKSGTEKDGGFTEAQLQELREISPKKKAGGQRNAIASALKVQRKIIKTLNESMDELSRNRKSIWWRRWIPREE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03320 576 Gene3D Transferase(Phosphotransferase) domain 1 257 471 - -
Trre9g03320 576 ProSitePatterns Protein kinases ATP-binding region signature. 154 181 IPR017441 GO:0005524
Trre9g03320 576 CDD STKc_SNT7_plant 152 466 - -
Trre9g03320 576 ProSiteProfiles Protein kinase domain profile. 148 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03320 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Trre9g03320 576 Pfam Protein kinase domain 150 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03320 576 Coils Coil 542 562 - -
Trre9g03320 576 SMART serkin_6 148 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03320 576 FunFam Serine/threonine-protein kinase STN7, chloroplastic 257 471 - -
Trre9g03320 576 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 49 551 - -
Trre9g03320 576 SUPERFAMILY Protein kinase-like (PK-like) 133 468 IPR011009 -
Trre9g03320 576 Gene3D Phosphorylase Kinase; domain 1 135 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03320 Trre-Chr9 41906799 41911096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03320 266 467 Core Cell Cycle Gene Families AT2G38620 30.516 1.05e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Trre9g03320 Pkinase 5.1e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03320 9 41906799 41911096 Trre9g03320 9 41906799 41911096 ECH