Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03314 ATGCAAGCTCATACATTCTCCTACATATCCTCAATTCAAACTAATAATAATGAAACTGTTGATGAATCTTCCATTTCACTCTCTCTTGGTCCTCCTGGTACACATCACCATAAACCTAAACTATCCTCTTCAACAAATCACTCAGCTACTACTTTTCATCACCATCATCAGATTAATCACCAAAAGCAAAACTTTACCATTGATGATGATGATAATGATGAGCAAAGTGGTGTAACAGTTGCACTTCATATTGGTCTTCCAAATAACACACCTATTACCAAACCTGATCATCATCATCATTTGGCTTCAGCTCCTATTCAAAGTCAATATTGGATTCCTTCTCCTGCTCAAATTCTCATTGGACCAACACAGTTCTCTTGTACAGTCTGCAATAAAATGTTCAACCGTTTCAACAATATGCAGATGCATATGTGGGGACATGGGTCACAATACAGGAAAGGGCCAGAATCTCTAAGAGGAGTAAAACCAGCTTCATCAATGTTAAGGCTACCTTGCTATTGCTGTGCTGAGGGATGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAGGATTTTAGGACACTTCAAACACATTACAAGAGGAAGCATGGAGCTAAGCCATTTGGGTGTAGAAAGTGTGGGAAACCTTTTGCAGTGAGAGGTGATTGGAGAACACATGAGAAAAATTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACATAAGAGATCACTCAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCGCATACCGTTGAGAGTTGCGAAGATCAGGATGTTTTGTTGGGTGATGAATATGATGAGGAATTTGAAGGAGATGAAAATGATGAAGATGATGATGATGATAACATTGATGGAATGGTTTTTGGTTTTAATTAA 921 0.3876 MQAHTFSYISSIQTNNNETVDESSISLSLGPPGTHHHKPKLSSSTNHSATTFHHHHQINHQKQNFTIDDDDNDEQSGVTVALHIGLPNNTPITKPDHHHHLASAPIQSQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQDVLLGDEYDEEFEGDENDEDDDDDNIDGMVFGFN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03314 306 PANTHER ZINC FINGER PROTEIN WIP2 24 278 IPR043584 GO:0003700|GO:0010468
Trre9g03314 306 MobiDBLite consensus disorder prediction 280 306 - -
Trre9g03314 306 SUPERFAMILY beta-beta-alpha zinc fingers 121 146 IPR036236 -
Trre9g03314 306 FunFam Zinc finger protein WIP2 179 261 - -
Trre9g03314 306 Gene3D Classic Zinc Finger 116 236 - -
Trre9g03314 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Trre9g03314 306 MobiDBLite consensus disorder prediction 280 299 - -
Trre9g03314 306 MobiDBLite consensus disorder prediction 18 48 - -
Trre9g03314 306 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Trre9g03314 306 SUPERFAMILY beta-beta-alpha zinc fingers 193 230 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03314 Trre-Chr9 41825447 41826876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03314 15 300 C2H2 Transcription Factor Family AT1G13290 61.824 1.80e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g03314 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03314 9 41825447 41826876 Trre9g03314 9 41825447 41826876 ECH